lineage | Count |
---|---|
34 | |
lineage4.5 | 3 |
lineage2.2.1.1 | 4 |
lineage4 | 37 |
lineage4.2.1 | 1 |
lineage4.9 | 12 |
lineage4.4.2 | 6 |
lineage2.2.1 | 34 |
lineage4.6.5 | 2 |
lineage2.2 | 22 |
lineage4.3.4.2.1 | 1 |
lineage2.2.2 | 19 |
lineage3 | 4 |
lineage4;lineage2.2.2 | 1 |
lineage2.2.2;lineage2.2.1 | 2 |
lineage4.9;lineage2 | 1 |
La1.6 | 1 |
lineage4.3.4.1 | 1 |
lineage4.8.1 | 1 |
lineage4.4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 187 |
ID | Drug resistance | Lineage | Country iso2 | ERR2693230 | Other | None | SAMN02360585 | HR-TB | lineage4.5 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR6045706 | Sensitive | lineage4 | None | ERR2693257 | Other | None | SRR6045503 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046210 | Other | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046395 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR067681 | HR-TB | None | ERR133986 | HR-TB | None | ERR349296 | Sensitive | lineage4 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3445501 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797061 | Other | None | ERR3797017 | Other | None | ERR4769442 | HR-TB | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798431 | HR-TB | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | ERR4798406 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR7801202 | HR-TB | lineage4.3.4.2.1 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013598 | HR-TB | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013595 | HR-TB | lineage3 | None | SRR1013599 | HR-TB | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013614 | HR-TB | lineage2.2 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013618 | MDR-TB | None | SRR1013611 | HR-TB | lineage4 | None | SRR1013617 | MDR-TB | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013612 | HR-TB | lineage4 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1013622 | Pre-XDR-TB | lineage2.2 | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR1013634 | MDR-TB | lineage2.2 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1013633 | MDR-TB | lineage2.2 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048869 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1048885 | MDR-TB | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048983 | HR-TB | None | SRR1048988 | HR-TB | lineage2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048853 | Pre-XDR-TB | lineage4;lineage2.2.2 | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048982 | HR-TB | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048992 | HR-TB | lineage2.2.2 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1048996 | HR-TB | lineage4.5 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049023 | HR-TB | lineage2.2 | None | SRR1049027 | Pre-XDR-TB | None | SRR1049022 | HR-TB | lineage4.9;lineage2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1049041 | MDR-TB | None | SRR10808399 | Sensitive | lineage4 | None | SRR10993937 | Other | La1.6 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR3675234 | Other | None | SRR14801749 | Sensitive | None | SRR21277781 | HR-TB | lineage2.2.1.1 | None | SRR21277802 | Sensitive | lineage2.2.1.1 | None | SRR21277803 | Sensitive | lineage2.2.1 | None | ERR158583 | HR-TB | None | SRR21277498 | Other | lineage2.2.1 | None | SRR21277768 | Sensitive | lineage4.4.2 | None | SRR21277782 | Sensitive | lineage2.2.1 | None | ERR11068627 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR3675510 | Other | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675312 | HR-TB | lineage4 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SRR3675550 | Other | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | SRR4033243 | Sensitive | lineage4.8.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341418 | Other | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SRR5681136 | Sensitive | lineage4.4.1.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR4818929 | HR-TB | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None |
---|