Rv0006 - c.16T>C
Drug resistance types
2 Sensitive
2 RR-TB
18 HR-TB
6 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
32 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage2.1 | 2 |
| lineage4.9 | 10 |
| 6 | |
| lineage2.1;lineage4.9 | 5 |
| lineage4.9;lineage7 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage2.2.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.5 | 1 |
| lineage4.3.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage2.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 62 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR4407463 | HR-TB | None | SRR3675236 | Other | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR387051 | RR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | DRR189014 | Other | lineage4.5 | None | ERR6866060 | Sensitive | lineage4.3.3 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4024703 | Sensitive | lineage4.3.3 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4800341 | HR-TB | lineage3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1184294 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR1184381 | MDR-TB | None | SRR6789626 | Other | None | ERR234659 | HR-TB | None | SRR1172857 | Other | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR5341330 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR5535933 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1165699 | Other | lineage4.9 | None |
|---|
