Rv0006 - c.1975C>T
Drug resistance types
6 Sensitive
0 RR-TB
21 HR-TB
24 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
16 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 18 |
| lineage4 | 1 |
| lineage4.6.1.2 | 16 |
| lineage1.2.2.2 | 6 |
| La1.7;lineage4.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| 2 | |
| lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.4.1.1;lineage4.6.1.2 | 4 |
| lineage3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.7;lineage4.9 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.5 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 67 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323037 | Other | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR3675387 | Other | lineage4.9 | None | ERR987757 | MDR-TB | lineage4.6.1.2 | None | SRR29017414 | MDR-TB | lineage1.2.2.2 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4553900 | MDR-TB | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR1049563 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None | SRR25827548 | Other | lineage3 | None | SRR1173544 | MDR-TB | lineage4.6.1.2 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR1049564 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR29017257 | MDR-TB | lineage1.2.2.2 | None | ERR4553953 | MDR-TB | lineage1.2.2.2 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR550693 | MDR-TB | lineage4.6.1.2 | cg | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR1140664 | MDR-TB | lineage4.6.1.2 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1140691 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR29017210 | MDR-TB | lineage1.2.2.2 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9285900 | Sensitive | lineage4.6.1.2 | None | ERR4553679 | MDR-TB | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR040135 | MDR-TB | lineage4.6.1.2 | ug | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR4553726 | MDR-TB | lineage1.2.2.2 | None | ERR038750 | MDR-TB | lineage4.6.1.2 | ug | SRR1049651 | MDR-TB | lineage4.6.1.2 | None | SAMN02381022 | MDR-TB | lineage4.6.1.2 | ug | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR4553674 | MDR-TB | lineage1.2.2.2 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR1062912 | MDR-TB | lineage4.6.1.2 | None | SRR1049652 | MDR-TB | lineage4.6.1.2 | None | ERR550694 | MDR-TB | lineage4.6.1.2 | cg | SRR1062873 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None |
|---|
