Rv0639 - c.504T>G
Drug resistance types
15 Sensitive
11 RR-TB
5 HR-TB
80 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
9 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1;lineage4.9 | 23 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 11 |
| lineage1.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage2.2.1 | 18 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| 2 | |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage4.1.2.1 | 4 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| La3;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| lineage4.9 | 5 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage1.2.1.2.1;lineage2.2.1 | 1 |
| La1.7.1 | 1 |
| lineage2.1;lineage4.9 | 4 |
| lineage1.1.2;lineage4 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La1.8.1 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.1.1.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 120 |
Geographic prevalence
Country level data for this variant is available for 13 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4188350 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675515 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR323038 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6797548 | Sensitive | lineage2.2.1 | None | SRR3675568 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR28044665 | Sensitive | lineage2.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR1640750 | RR-TB | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6866929 | Sensitive | lineage4.1.2.1 | None | ERR6866216 | Sensitive | lineage4.1.2.1 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675558 | MDR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675545 | RR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675444 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR21690994 | Other | lineage2.2.1 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4828736 | MDR-TB | lineage2.2.1 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR4828732 | Other | lineage2.2.1 | vn | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR4828729 | Other | lineage1.2.1.2.1;lineage2.2.1 | vn | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR5073628 | Sensitive | lineage2.2.1 | vn | ERR2843514 | Sensitive | lineage2.2.1 | None | SRR5067230 | Sensitive | lineage2.2.1 | vn | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5311083 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR7240492 | MDR-TB | La1.7.1 | None | ERR6866217 | Sensitive | lineage4.1.2.1 | None | ERR212001 | HR-TB | None | ERR7911101 | MDR-TB | lineage2.2.1 | vn | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4817692 | MDR-TB | lineage1.1.2;lineage4 | None | ERR176766 | MDR-TB | lineage2.1;lineage4.9 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2513583 | Sensitive | lineage4.6.2.2 | gb | SRR3675322 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | SRR1791696 | RR-TB | La1.8.1 | None | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675506 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797023 | MDR-TB | La1.8.1 | None | ERR3283016 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3275914 | Other | lineage2.2.1 | nl | ERR4816551 | MDR-TB | lineage4.1.1.3 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR5067220 | Sensitive | lineage2.2.1 | vn | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR25827778 | MDR-TB | lineage2.2.1 | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | SRR5073833 | Other | lineage2.2.1 | vn | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5067388 | Other | lineage2.2.1 | vn | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR28045134 | Sensitive | lineage2.2.1 | None | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR4828528 | Sensitive | lineage2.2.1 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR5073745 | Sensitive | lineage2.2.1 | vn | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR4821053 | RR-TB | lineage3 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR3675561 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR5311089 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR2513772 | Sensitive | lineage4.6.2.2 | gb | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4828540 | Sensitive | lineage2.2.1 | vn | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None |
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