TB-Profiler result

Run: ERR2514181
Summary

Run ID: ERR2514181

Sample name:

Date: 31-03-2023 20:10:13

Number of reads: 709644

Percentage reads mapped: 77.89

Strain: lineage1.2.1.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage1 Indo-Oceanic EAI RD239 1.0
lineage1.2.1 Indo-Oceanic EAI2 RD239 1.0
lineage1.2.1.2 Indo-Oceanic NA RD239 1.0
lineage1.2.1.2.1 Indo-Oceanic NA RD239 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.86 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.2 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.21 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6112 p.Met291Ile missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8452 p.Ala384Val missense_variant 1.0
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9260 c.1959G>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575368 c.21T>C synonymous_variant 1.0
rpoB 759615 c.-192A>C upstream_gene_variant 0.31
rpoB 759620 c.-187A>C upstream_gene_variant 0.27
rpoB 761897 c.2091C>T synonymous_variant 0.13
rpoB 762143 c.2337T>C synonymous_variant 0.17
rpoB 762149 c.2343G>C synonymous_variant 0.18
rpoB 762156 p.Val784Ile missense_variant 0.18
rpoB 762167 c.2361T>C synonymous_variant 0.2
rpoB 762176 c.2370T>C synonymous_variant 0.22
rpoB 762177 p.Arg791Thr missense_variant 0.22
rpoB 762181 p.Asp792Ala missense_variant 0.22
rpoB 762185 c.2379G>C synonymous_variant 0.22
rpoB 762194 c.2388G>C synonymous_variant 0.2
rpoB 762200 c.2394C>T synonymous_variant 0.25
rpoC 762947 c.-423C>G upstream_gene_variant 0.13
rpoC 762971 c.-399G>C upstream_gene_variant 0.13
rpoC 762980 c.-390T>C upstream_gene_variant 0.13
rpoC 762989 c.-381G>C upstream_gene_variant 0.12
rpoC 762995 c.-375G>C upstream_gene_variant 0.11
rpoB 763005 p.Cys1067Gly missense_variant 0.1
rpoB 763014 p.Met1070Leu missense_variant 0.1
rpoB 763017 p.Gln1071Glu missense_variant 0.1
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 0.13
rpoC 763043 c.-327G>C upstream_gene_variant 0.13
rpoC 763053 c.-317T>C upstream_gene_variant 0.14
rpoC 763531 c.162G>C synonymous_variant 1.0
rpoC 763884 p.Ala172Val missense_variant 1.0
rpoC 763886 c.517C>A synonymous_variant 1.0
rpoC 764377 c.1008C>G synonymous_variant 0.11
rpoC 764380 c.1011G>C synonymous_variant 0.11
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.12
rpoC 764404 c.1035C>T synonymous_variant 0.11
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.11
rpoC 764410 c.1041G>C synonymous_variant 0.11
rpoC 764424 p.Asn352Thr missense_variant 0.11
rpoC 764431 c.1062G>C synonymous_variant 0.1
rpoC 764434 c.1065A>G synonymous_variant 0.1
rpoC 764435 c.1066A>C synonymous_variant 0.1
rpoC 764441 p.Ile358Leu missense_variant 0.1
rpoC 764455 c.1086G>C synonymous_variant 0.14
rpoC 764458 c.1089G>C synonymous_variant 0.14
rpoC 764461 c.1092A>G synonymous_variant 0.15
rpoC 764485 c.1116G>C synonymous_variant 0.17
rpoC 764497 c.1128A>G synonymous_variant 0.11
rpoC 764503 c.1134G>T synonymous_variant 0.12
rpoC 764573 p.Leu402Ile missense_variant 0.17
rpoC 764578 c.1209C>G synonymous_variant 0.17
rpoC 764581 c.1212T>C synonymous_variant 0.15
rpoC 764582 p.Leu405Met missense_variant 0.17
rpoC 764602 c.1233C>T synonymous_variant 0.17
rpoC 764605 c.1236G>T synonymous_variant 0.17
rpoC 764611 c.1242G>T synonymous_variant 0.17
rpoC 764632 c.1263T>A synonymous_variant 0.17
rpoC 764647 c.1278C>T synonymous_variant 0.18
rpoC 764650 c.1281G>C synonymous_variant 0.18
rpoC 764653 c.1284G>C synonymous_variant 0.18
rpoC 764656 c.1287C>T synonymous_variant 0.18
rpoC 764662 c.1293G>C synonymous_variant 0.2
rpoC 764677 c.1308C>G synonymous_variant 0.25
rpoC 764678 p.Lys437Gln missense_variant 0.25
rpoC 764683 c.1314G>C synonymous_variant 0.15
rpoC 764692 c.1323C>T synonymous_variant 0.15
rpoC 764713 c.1344G>C synonymous_variant 0.18
rpoC 764731 c.1362G>C synonymous_variant 0.22
rpoC 764737 c.1368G>C synonymous_variant 0.25
rpoC 764809 c.1440C>T synonymous_variant 0.9
rpoC 766575 p.Asp1069Gly missense_variant 0.23
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 777529 p.Ala318Thr missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 800682 c.-127G>A upstream_gene_variant 0.17
fbiC 1302821 c.-110G>A upstream_gene_variant 1.0
Rv1258c 1406312 c.1029T>C synonymous_variant 1.0
embR 1417019 p.Cys110Tyr missense_variant 1.0
atpE 1460907 c.-138T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472068 n.223T>G non_coding_transcript_exon_variant 0.22
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.25
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.25
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.19
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.2
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.53
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.2
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.13
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.44
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.42
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.42
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.75
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.52
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.42
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.3
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.38
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.63
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.17
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.22
rrs 1472282 n.437T>G non_coding_transcript_exon_variant 0.2
rrs 1472284 n.439C>T non_coding_transcript_exon_variant 0.2
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.22
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.25
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.29
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.33
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.33
rrs 1472332 n.487A>G non_coding_transcript_exon_variant 0.33
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 0.33
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.33
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.33
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.5
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.4
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.4
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.4
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.4
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.4
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.4
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.5
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.5
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.5
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.5
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 0.5
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.5
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.5
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.5
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.5
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.5
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.5
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.5
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.5
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.67
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.67
rrs 1472498 n.653C>A non_coding_transcript_exon_variant 0.5
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.72
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.14
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.76
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.73
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.69
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.74
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.79
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.79
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.14
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.79
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.79
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.63
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.61
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.4
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.93
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.12
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.8
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.8
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.59
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.96
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.81
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.16
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.81
rrs 1472668 n.825_829delGGGTT non_coding_transcript_exon_variant 1.0
rrs 1472675 n.830_831insAGAC non_coding_transcript_exon_variant 1.0
rrs 1472680 n.835C>T non_coding_transcript_exon_variant 0.42
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.9
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.13
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.47
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.84
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.12
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.86
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.82
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.82
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.76
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.22
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.56
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.5
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.5
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.4
rrs 1472892 n.1047T>C non_coding_transcript_exon_variant 0.2
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.83
rrs 1472951 n.1106T>C non_coding_transcript_exon_variant 0.13
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.57
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.13
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.57
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.78
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.78
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.78
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.62
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.12
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.52
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.78
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.11
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.15
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.92
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.85
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.85
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.86
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.35
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.36
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.87
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.81
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.9
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.7
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.9
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.9
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.85
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.35
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.9
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.6
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.47
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.89
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.88
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.62
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.62
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.5
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.7
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.7
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.2
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.69
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.5
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.5
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.71
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.22
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.74
rrl 1473384 n.-274A>G upstream_gene_variant 0.43
rrl 1473593 n.-65A>G upstream_gene_variant 0.2
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.6
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.6
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 0.6
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.6
rrl 1474384 n.727C>T non_coding_transcript_exon_variant 0.4
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.6
rrl 1474393 n.736A>G non_coding_transcript_exon_variant 0.6
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.75
rrl 1474406 n.749T>G non_coding_transcript_exon_variant 0.5
rrl 1474413 n.757_777delCCCACACGCGCATACGCGCGT non_coding_transcript_exon_variant 1.0
rrl 1474437 n.782_784delATA non_coding_transcript_exon_variant 0.5
rrl 1474448 n.791T>C non_coding_transcript_exon_variant 0.6
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.67
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.67
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.6
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.5
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.5
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.4
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.67
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.5
rrl 1474638 n.981C>T non_coding_transcript_exon_variant 0.67
rrl 1474652 n.995T>G non_coding_transcript_exon_variant 0.5
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474687 n.1030C>G non_coding_transcript_exon_variant 1.0
rrl 1474714 n.1058_1060delTAA non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.67
rrl 1474752 n.1096delA non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 1.0
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.4
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 0.33
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.29
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.25
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.25
rrl 1475760 n.2103C>T non_coding_transcript_exon_variant 0.29
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.29
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.29
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.29
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.25
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.25
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.25
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.22
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.22
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.29
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.29
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.25
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.25
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.25
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.25
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.29
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.25
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.25
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.22
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.22
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.22
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.2
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.71
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.82
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.7
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.61
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.82
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.65
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.81
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.38
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.57
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.33
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.4
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.4
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.4
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.4
inhA 1674162 c.-40C>T upstream_gene_variant 1.0
rpsA 1833970 c.429G>T synonymous_variant 0.13
rpsA 1833976 c.435C>T synonymous_variant 0.16
rpsA 1833979 c.438T>C synonymous_variant 0.16
rpsA 1833994 c.453G>C synonymous_variant 0.15
rpsA 1833997 c.456G>C synonymous_variant 0.15
rpsA 1834012 c.471G>C synonymous_variant 0.15
rpsA 1834039 c.498C>T synonymous_variant 0.11
rpsA 1834040 p.Lys167Gln missense_variant 0.17
rpsA 1834051 c.510G>A synonymous_variant 0.16
rpsA 1834499 c.959delT frameshift_variant 0.1
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
kasA 2519048 p.Gly312Ser missense_variant 1.0
ahpC 2726051 c.-142G>A upstream_gene_variant 1.0
Rv2752c 3065260 p.Pro311Leu missense_variant 0.12
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339417 c.300A>G synonymous_variant 1.0
Rv3083 3448714 p.Asp71His missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474597 c.591C>A synonymous_variant 1.0
fprA 3474674 p.Val223Ala missense_variant 0.13
fprA 3475159 p.Asn385Asp missense_variant 1.0
whiB7 3568488 c.191delG frameshift_variant 1.0
fbiB 3640557 c.-978T>C upstream_gene_variant 1.0
clpC1 4040517 p.Val63Ala missense_variant 1.0
embC 4239789 c.-74G>A upstream_gene_variant 1.0
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4241042 p.Asn394Asp missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243580 c.348G>A synonymous_variant 1.0
embA 4244420 c.1188G>C synonymous_variant 1.0
embA 4245969 p.Pro913Ser missense_variant 1.0
embB 4247578 c.1065G>A synonymous_variant 0.95
embB 4247646 p.Glu378Ala missense_variant 0.95
embB 4249065 p.Gly851Val missense_variant 1.0
aftB 4267537 c.1300C>A synonymous_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
ubiA 4269864 c.-32delG upstream_gene_variant 1.0
whiB6 4338361 p.Arg54Gln missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
whiB6 4338603 c.-82C>T upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407873 c.330G>T synonymous_variant 1.0