Rv0565c - c.99G>C
Drug resistance types
0 Sensitive
2 RR-TB
14 HR-TB
9 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
42 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage6.3 | 2 |
| 9 | |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage2.1;lineage4.9 | 10 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage5.2 | 2 |
| lineage2.2.1 | 2 |
| La3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 7 |
| lineage3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.1 | 1 |
| lineage4 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 69 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | SRR18213713 | HR-TB | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184372 | MDR-TB | None | ERR2514692 | Other | None | SRR1172857 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR9117709 | Other | None | ERR234659 | HR-TB | None | SRR25827682 | Other | None | SRR3675236 | Other | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR502912 | Other | lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1172728 | RR-TB | La3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None |
|---|
