Rv1854c - c.375T>C


Drug resistance types
20 Sensitive 0 RR-TB 20 HR-TB 9 MDR-TB 0 Pre-XDR-TB 0 XDR-TB 28 Other
lineage Counts
lineage Count
lineage4.9 36
M.canetti;lineage4.2 1
lineage4.6.3;lineage4.9 1
La1.7;M.canetti;lineage4.9 4
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage4.2;lineage4.6.3;lineage4.9.1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
M.canetti;lineage4.9 3
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
La1.2.BCG 1
lineage4.2;lineage4.9 1
lineage2.1;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage4.3.4.2.1 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
La1.7;lineage4.9 2
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage4.9;lineage9 1
La1.7.X-unk4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2.2 1
lineage4.9;lineage9 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 77
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5341467 Other lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR926156 Sensitive lineage4.9 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR502511 Sensitive lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR212123 Other lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR161037 Other lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR3283032 Other lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR926154 Sensitive lineage4.9 None
ERR1035122 Sensitive lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR926164 Other lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
ERR373947 Other lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR926165 Sensitive lineage4.9 None
ERR926155 Sensitive lineage4.9 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR926157 Sensitive lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
ERR926163 Other lineage4.9 None
ERR751326 Other lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR363499 Sensitive lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
SRR3675387 Other lineage4.9 None
ERR971389 Sensitive lineage4.9 None
ERR323085 Sensitive lineage4.9 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR5341299 HR-TB lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR10808730 Other lineage4.9 None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR323062 Sensitive lineage4.9 None
ERR137286 Other lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR736848 Other lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
ERR926160 Sensitive lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR124636 Sensitive lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR5341308 Sensitive lineage4.9 None