Rv0486 - c.-684G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
5 RR-TB
41 HR-TB
27 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
34 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 17 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.9 | 10 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 8 |
| 7 | |
| lineage2.2.2;lineage4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
| lineage2.2.1 | 4 |
| lineage2.1;lineage4.9 | 4 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage2.2 | 1 |
| lineage2.1 | 2 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2 | 1 |
| lineage4.8 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 108 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR3675545 | Other | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR2027263 | Other | lineage4 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4811075 | Other | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | None | ERR4811142 | RR-TB | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675236 | Other | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR702406 | Other | lineage2.1 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR234659 | Other | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3468607 | Other | lineage4.9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4817893 | Other | lineage4.8 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR28119752 | Other | lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR28119805 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None |
|---|
