Rv0668 - c.3919C>T
Drug resistance types
5 Sensitive
3 RR-TB
16 HR-TB
16 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3.1 | 11 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage6.3.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage2.1 | 3 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.9 | 6 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2.1 | 2 |
| lineage2.2.1 | 2 |
| La3;lineage2 | 1 |
| lineage4.1.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 3 |
| 2 | |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage2.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7;lineage4.9;lineage7 | 2 |
| La3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La1.8.1 | 1 |
| La1.7;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 69 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR234111 | MDR-TB | lineage3.1 | np | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4821076 | Sensitive | lineage3.1 | gb | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4830073 | Sensitive | lineage2.2.1 | None | ERR031465 | MDR-TB | lineage3.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR25827682 | Other | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR551397 | Sensitive | lineage3.1 | de | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR2513554 | Sensitive | lineage3.1 | gb | ERR4798579 | Sensitive | lineage3.1 | in | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4553455 | MDR-TB | lineage3.1 | None | SRR16058589 | Other | La1.8.1 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | SRR28046024 | Other | lineage3.1 | None | ERR4553836 | MDR-TB | lineage3.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR2100324 | MDR-TB | lineage3.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR114476 | MDR-TB | lineage3.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None |
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