Rv0668 - c.3919C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
11 Sensitive
2 RR-TB
20 HR-TB
14 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3.1 | 17 |
| 7 | |
| lineage4.9;lineage7 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.8.1 | 2 |
| lineage4.9;lineage6.3 | 3 |
| lineage2.2.1.2 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.2.1 | 5 |
| lineage4.9 | 8 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.2.1;lineage4.8 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage6.3.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| lineage2.1 | 2 |
| La3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 77 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4798579 | Sensitive | lineage3.1 | in | SRR25827682 | Other | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR551397 | Sensitive | lineage3.1 | de | ERR4821076 | Sensitive | lineage3.1 | gb | ERR2513554 | Sensitive | lineage3.1 | gb | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR16058589 | Other | La1.8.1 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4811105 | HR-TB | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR30182298 | Sensitive | lineage3.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR29017641 | MDR-TB | lineage3.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR4553836 | MDR-TB | lineage3.1 | None | ERR13265221 | Sensitive | lineage3.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR1184294 | Other | lineage4.9 | None | SRR29539513 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR28119805 | Other | lineage4.9 | None | SRR28046024 | Other | lineage3.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR234111 | MDR-TB | lineage3.1 | np | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9124912 | Other | La1.8.1 | None | SRR29772492 | MDR-TB | lineage3.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4810741 | HR-TB | None | ERR4811142 | RR-TB | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR4553455 | MDR-TB | lineage3.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR29017013 | MDR-TB | lineage3.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4830073 | Sensitive | lineage2.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR2100324 | MDR-TB | lineage3.1 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR114476 | MDR-TB | lineage3.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR031465 | MDR-TB | lineage3.1 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR30182593 | Sensitive | lineage3.1 | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None |
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