Rv1173 - c.550_552delCAAinsGG
Drug resistance types
0 Sensitive
2 RR-TB
14 HR-TB
31 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
12 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3.1.2.2 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 1 |
| lineage4.9 | 15 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 2 |
| 1 | |
| M.canetti;lineage2.1;lineage4.9 | 7 |
| La1.7;lineage4.9 | 1 |
| lineage2.2 | 3 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| La2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 1 |
| La1.2;La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 59 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4816478 | HR-TB | lineage4 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4769452 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR5535933 | Other | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None |
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