Rv0006 - c.2082T>G
Drug resistance types
5 Sensitive
2 RR-TB
22 HR-TB
1 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
33 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.2 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.9 | 14 |
| lineage4.9;lineage6.3 | 4 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| La3;lineage2 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 5 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.3.3;lineage4.5 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage3 | 2 |
| La3 | 2 |
| La3;lineage4.9 | 2 |
| 4 | |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.2.1 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.4.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1 | 1 |
| lineage4.1.2.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.5 | 1 |
| lineage1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 65 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29772538 | MDR-TB | lineage1.1.2 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR5067266 | Sensitive | lineage4.3.3;lineage4.5 | vn | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4800341 | Other | lineage3 | None | SRR1172817 | Other | La3 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR9787197 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR400501 | Sensitive | lineage3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR26159043 | Other | lineage4.9 | None | SRR6789626 | Other | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831937 | Sensitive | lineage4.3.3;lineage4.5 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR29096900 | Sensitive | lineage4.3.4.2 | None | SRR1165699 | Other | lineage4.9 | None | SRR28119777 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119805 | Other | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5073572 | HR-TB | lineage4.5 | vn | ERR1035157 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR6044835 | Other | lineage4.9 | None | SRR25827682 | Other | None |
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