Rv0010c - c.-339C>T
Drug resistance types
2 Sensitive
2 RR-TB
14 HR-TB
3 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 9 |
| lineage2.1;lineage6.3 | 1 |
| lineage3 | 2 |
| lineage4.1.1.1 | 1 |
| 16 | |
| lineage4.6.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.7 | 1 |
| lineage4.1.3 | 2 |
| lineage4.8 | 1 |
| lineage4.9 | 10 |
| La3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.2.1 | 6 |
| lineage2.2.1;lineage3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.1 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 3 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 73 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4798683 | Sensitive | lineage3 | in | ERR176793 | Other | lineage4.1.1.1 | None | ERR4800341 | Other | None | ERR4816999 | Other | None | ERR4811142 | RR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811075 | Other | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675236 | Other | None | SRR12416824 | HR-TB | None | ERR4817893 | Other | lineage4.8 | None | SRR1165699 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR1172817 | Other | La3 | None | SRR25827790 | XDR-TB | lineage2.2.1;lineage3 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR25827682 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1172951 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR1196546 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR28119753 | Other | lineage4.9 | None | SRR7535086 | Other | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR9787197 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | SRR17856659 | Pre-XDR-TB | lineage3 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None |
|---|
