Rv0676c - c.2479_2481delCTGinsAC
Drug resistance types
3 Sensitive
2 RR-TB
26 HR-TB
24 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
30 Other
lineage Counts
| lineage | Count |
|---|---|
| 4 | |
| lineage4.9 | 21 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 6 |
| lineage4.1.2 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.1.2.1 | 1 |
| lineage2.2.1 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 3 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La3;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 3 |
| lineage4.3.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.1.2.1.1 | 1 |
| La3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage2.2 | 3 |
| La1.8.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 87 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| ERR987722 | MDR-TB | None | |
| SRR1196583 | Other | lineage4.9 | None |
| SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None |
| SRR1184388 | Other | lineage2.1;lineage4.9 | None |
| SRR1173629 | Other | lineage2.1;lineage4.9 | None |
| ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None |
| SRR1159378 | Other | lineage4.9 | None |
| SRR9970980 | HR-TB | lineage4.1.2 | None |
| ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None |
| SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR1163221 | MDR-TB | lineage4.1.2.1 | None |
| SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None |
| SRR6045526 | Other | lineage4.9 | None |
| SRR6046133 | HR-TB | lineage4.9 | None |
| SRR28119811 | Other | lineage2.2.1;lineage6.3 | None |
| ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None |
| ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None |
| ERR4798648 | MDR-TB | lineage3.1.2.2 | None |
| SRR10315567 | HR-TB | lineage2.2.1 | None |
| ERR3273109 | HR-TB | lineage4 | None |
| SRR1165699 | Other | lineage4.9 | None |
| ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None |
| SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None |
| ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None |
| SRR6046259 | Sensitive | lineage4.9 | None |
| ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None |
| ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None |
| ERR161034 | HR-TB | lineage4.3.4.2.1 | None |
| SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None |
| ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None |
| SRR26399973 | Other | La3;lineage4.9 | None |
| SRR1173355 | Other | lineage4.9 | None |
| ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None |
| ERR736839 | HR-TB | M.canetti;lineage4.9 | None |
| SRR5341384 | HR-TB | lineage4.9 | None |
| ERR3283030 | HR-TB | lineage4.9 | None |
| SRR3675216 | Other | lineage2.1;lineage4.9 | None |
| ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None |
| SRR6045219 | HR-TB | lineage4.9 | None |
| ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None |
| SRR9970981 | RR-TB | lineage4.3.2.1 | None |
| ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None |
| ERR751326 | Other | lineage4.9 | None |
| ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None |
| SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None |
| ERR760733 | MDR-TB | lineage4.1.2.1.1 | None |
| SRR5341453 | Other | lineage4.9 | None |
| SRR1172728 | RR-TB | La3 | None |
| ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None |
| ERR11465511 | Other | lineage4.3.4.2.1 | None |
| SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None |
| ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None |
| ERR4796929 | Sensitive | lineage4.9 | None |
| ERR11465510 | Sensitive | lineage4.3.4.2.1 | None |
| SRR20970016 | Other | lineage2.2 | None |
| SRR1184381 | MDR-TB | None | |
| ERR11252612 | Other | La3;lineage4.9 | None |
| SRR25827682 | Other | None | |
| ERR212001 | HR-TB | None | |
| SRR28119805 | Other | lineage4.9 | None |
| ERR137286 | Other | lineage4.9 | None |
| ERR736872 | HR-TB | lineage4.9 | None |
| ERR4810624 | MDR-TB | lineage2.2 | None |
| ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None |
| ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| ERR736874 | Other | La3;lineage2.1;lineage4.9 | None |
| ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None |
| SRR1791747 | Other | La1.8.1 | None |
| SRR20969708 | HR-TB | lineage2.2 | None |
| ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None |
| ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None |
| ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None |
| ERR1063846 | HR-TB | lineage4.9 | None |
| SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None |
| SRR10808805 | Other | La1;lineage4.9 | None |
| ERR212121 | HR-TB | lineage4.9;lineage6.3 | None |
| ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None |
| SRR3675246 | Other | lineage4.9 | None |
| SRR1172234 | Other | lineage4.9 | None |
| ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None |
| ERR736867 | Other | lineage2.1;lineage4.9 | None |
| ERR4831117 | HR-TB | lineage4.9;lineage7 | None |
| ERR3283018 | HR-TB | lineage4.9 | None |
| SRR6046485 | Other | lineage4.9 | None |
| ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None |
