lineage | Count |
---|---|
lineage2.2.1 | 7 |
75 | |
lineage4.6.2.2 | 2 |
lineage4.9 | 7 |
lineage4.1.2.1 | 9 |
lineage4 | 6 |
La1 | 1 |
lineage1.2.1.2.1 | 2 |
lineage4.3.4.2.1 | 1 |
lineage4.8;lineage4.1 | 1 |
lineage3 | 16 |
La3 | 1 |
lineage4.3.3 | 1 |
lineage3.1 | 2 |
lineage2 | 2 |
lineage1.2.1.1 | 2 |
lineage4.6 | 1 |
lineage2.2.1.1 | 1 |
lineage4.8 | 1 |
lineage4.5 | 1 |
lineage1.1.3 | 1 |
lineage1.1.3.1 | 1 |
lineage4.1.1.3.1 | 1 |
lineage1.2.2.2 | 2 |
lineage1.1.2 | 2 |
lineage3.1.3 | 1 |
lineage4.6.5 | 1 |
lineage3.1.1 | 2 |
lineage2.2.1;La3 | 1 |
lineage3.1.2 | 1 |
lineage1.2.2.1 | 1 |
lineage4.9;La3 | 1 |
lineage6.3;lineage2.2.1 | 1 |
La1.2 | 1 |
lineage4.1.1 | 1 |
lineage4.3 | 1 |
lineage2.2 | 1 |
spoligotype | Count |
---|---|
None | 159 |
ID | Drug resistance | Lineage | Country iso2 | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR323043 | HR-TB | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR067681 | HR-TB | None | ERR133986 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR3439432 | Other | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797069 | Other | None | ERR387051 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR702404 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6336807 | HR-TB | lineage1.2.1.2.1 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR702406 | HR-TB | None | ERR736835 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9117709 | HR-TB | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR990545 | Other | lineage3 | None | ERR9786843 | Other | None | ERR9787197 | Other | None | SRR1169249 | Other | La3 | None | SRR1169194 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1172817 | HR-TB | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172857 | MDR-TB | None | SRR1173153 | HR-TB | None | SRR1172951 | Other | None | SRR1173778 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1173788 | Other | None | SRR1184294 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR12142341 | HR-TB | None | SRR18213683 | Sensitive | lineage1.2.1.1 | None | SRR15368973 | Other | None | SRR18213665 | Sensitive | lineage4.6 | None | SRR18213694 | Other | lineage2.2.1 | None | SRR18213705 | Sensitive | lineage3 | None | SRR18213707 | Sensitive | lineage1.2.1.2.1 | None | SRR18213697 | Other | lineage2.2.1.1 | None | SRR18213779 | Sensitive | lineage4.8 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18213747 | Sensitive | lineage3 | None | SRR18213767 | Sensitive | lineage1.1.3 | None | SRR18213801 | Sensitive | lineage3 | None | SRR18213789 | Sensitive | lineage3 | None | SRR18213814 | Sensitive | lineage3 | None | SRR18213802 | HR-TB | lineage1.1.3.1 | None | SRR18213844 | Sensitive | lineage3 | None | SRR18213833 | Sensitive | lineage4.1.2.1 | None | SRR18213845 | Sensitive | lineage4.9 | None | SRR18213836 | Sensitive | lineage3 | None | SRR18213846 | Sensitive | lineage4.1.2.1 | None | SRR18213838 | Sensitive | lineage3 | None | SRR18213889 | Sensitive | lineage3 | None | SRR18213858 | Sensitive | lineage4.1.2.1 | None | SRR18213880 | Sensitive | lineage3 | None | SRR18213883 | Sensitive | lineage3 | None | SRR18213849 | Sensitive | lineage2.2.1 | None | SRR18213863 | Sensitive | lineage1.2.1.1 | None | SRR18213877 | Sensitive | lineage4.1.1.3.1 | None | SRR18213878 | Sensitive | lineage1.2.2.2 | None | SRR18213879 | Sensitive | lineage1.1.2 | None | SRR18213896 | Sensitive | lineage3.1.3 | None | SRR18213916 | Other | lineage4.6.5 | None | SRR18213917 | Sensitive | lineage1.1.2 | None | SRR18213912 | Sensitive | lineage3 | None | SRR18213929 | Sensitive | lineage3.1.1 | None | SRR18213925 | Sensitive | lineage1.2.2.2 | None | SRR18213959 | Sensitive | lineage3 | None | SRR18213947 | Sensitive | lineage4.1.2.1 | None | SRR18213944 | Sensitive | lineage3 | None | SRR18213955 | Sensitive | lineage3.1.1 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR18213968 | Sensitive | lineage3.1.2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR18213963 | Sensitive | lineage1.2.2.1 | None | SRR18213965 | Sensitive | lineage3 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR23961549 | Other | La1.2 | None | ERR4815604 | HR-TB | None | SRR3675221 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR158583 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR176568 | Other | lineage4.3 | None | SRR3675236 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR176751 | HR-TB | None | SRR3675502 | Other | None | ERR4816999 | Other | None | SRR3675555 | HR-TB | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR234659 | HR-TB | None | SRR6046066 | HR-TB | None | ERR4818394 | Other | lineage4.9 | None | SRR5341333 | HR-TB | None | ERR4818615 | Other | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341418 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046824 | HR-TB | None |
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