Run ID: ERR2229084
Sample name:
Date: 31-03-2023 16:39:30
Number of reads: 1528554
Percentage reads mapped: 93.11
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6775 | c.-527G>C | upstream_gene_variant | 0.13 |
gyrA | 6787 | c.-515G>A | upstream_gene_variant | 0.14 |
gyrA | 6793 | c.-509T>C | upstream_gene_variant | 0.14 |
gyrB | 6797 | p.Gly520Thr | missense_variant | 0.15 |
gyrA | 6811 | c.-491C>T | upstream_gene_variant | 0.21 |
gyrA | 6841 | c.-461T>C | upstream_gene_variant | 0.17 |
gyrA | 6844 | c.-458T>C | upstream_gene_variant | 0.17 |
gyrA | 6853 | c.-449A>G | upstream_gene_variant | 0.17 |
gyrA | 6856 | c.-446T>C | upstream_gene_variant | 0.17 |
gyrA | 6859 | c.-443T>C | upstream_gene_variant | 0.16 |
gyrA | 6862 | c.-440C>G | upstream_gene_variant | 0.16 |
gyrA | 6868 | c.-434G>C | upstream_gene_variant | 0.14 |
gyrA | 6901 | c.-401G>C | upstream_gene_variant | 0.14 |
gyrA | 6904 | c.-398C>G | upstream_gene_variant | 0.14 |
gyrA | 6916 | c.-386G>C | upstream_gene_variant | 0.14 |
gyrA | 6919 | c.-383T>C | upstream_gene_variant | 0.13 |
gyrA | 6949 | c.-353A>G | upstream_gene_variant | 0.15 |
gyrA | 6952 | c.-350C>G | upstream_gene_variant | 0.15 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491217 | c.435T>C | synonymous_variant | 0.14 |
mshA | 576089 | p.Ala254Gly | missense_variant | 0.27 |
rpoB | 760181 | c.375T>C | synonymous_variant | 0.16 |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.15 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.15 |
rpoB | 760283 | c.477G>C | synonymous_variant | 0.14 |
rpoB | 760340 | c.534G>T | synonymous_variant | 0.14 |
rpoB | 760481 | c.675G>C | synonymous_variant | 0.14 |
rpoB | 760484 | c.678A>G | synonymous_variant | 0.14 |
rpoB | 760522 | p.Ser239Asn | missense_variant | 0.18 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.21 |
rpoB | 760841 | c.1035T>C | synonymous_variant | 0.14 |
rpoB | 760845 | p.Thr347Pro | missense_variant | 0.14 |
rpoB | 760859 | c.1053T>C | synonymous_variant | 0.18 |
rpoB | 760862 | c.1056G>C | synonymous_variant | 0.15 |
rpoB | 760869 | p.Val355Ile | missense_variant | 0.2 |
rpoB | 760925 | c.1119T>C | synonymous_variant | 0.15 |
rpoB | 760928 | c.1122G>C | synonymous_variant | 0.16 |
rpoB | 760931 | c.1125C>G | synonymous_variant | 0.16 |
rpoB | 760934 | c.1128C>T | synonymous_variant | 0.16 |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.16 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.14 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.14 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.17 |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.17 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.16 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.17 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.21 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.17 |
rpoB | 761219 | c.1413G>C | synonymous_variant | 0.17 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.13 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.12 |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.13 |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.13 |
rpoB | 761588 | c.1782C>T | synonymous_variant | 0.19 |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.18 |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.15 |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.19 |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.19 |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.19 |
rpoB | 761657 | c.1851C>G | synonymous_variant | 0.2 |
rpoB | 761675 | c.1869G>C | synonymous_variant | 0.15 |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.15 |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.16 |
rpoB | 762008 | c.2202C>T | synonymous_variant | 0.16 |
rpoB | 762014 | c.2208C>T | synonymous_variant | 0.2 |
rpoB | 762017 | c.2211A>G | synonymous_variant | 0.2 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.15 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.14 |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.14 |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.14 |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.13 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.13 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.14 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.23 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.22 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.15 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.15 |
rpoC | 763031 | c.-339T>G | upstream_gene_variant | 0.15 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.15 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.18 |
rpoC | 763402 | c.33C>G | synonymous_variant | 0.13 |
rpoC | 763441 | c.72C>T | synonymous_variant | 0.16 |
rpoC | 763444 | c.75T>C | synonymous_variant | 0.16 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.17 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.17 |
rpoC | 763603 | c.234C>T | synonymous_variant | 0.21 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.22 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.14 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.14 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.14 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.14 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.14 |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.16 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.16 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.31 |
rpoC | 763774 | c.405G>C | synonymous_variant | 0.34 |
rpoC | 763807 | c.438T>C | synonymous_variant | 0.34 |
rpoC | 763816 | c.447C>G | synonymous_variant | 0.36 |
rpoC | 763835 | p.Ala156Met | missense_variant | 0.37 |
rpoC | 763853 | p.Val162Ile | missense_variant | 0.29 |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.25 |
rpoC | 763872 | p.Gly168Ala | missense_variant | 0.21 |
rpoC | 763876 | p.Glu169Asp | missense_variant | 0.21 |
rpoC | 763879 | c.510A>G | synonymous_variant | 0.2 |
rpoC | 763888 | c.519G>C | synonymous_variant | 0.19 |
rpoC | 763891 | c.522G>C | synonymous_variant | 0.17 |
rpoC | 763894 | c.525A>G | synonymous_variant | 0.2 |
rpoC | 763900 | c.531G>C | synonymous_variant | 0.24 |
rpoC | 763945 | c.576T>C | synonymous_variant | 0.21 |
rpoC | 763951 | c.582G>C | synonymous_variant | 0.18 |
rpoC | 763960 | c.591T>C | synonymous_variant | 0.15 |
rpoC | 763987 | c.618C>T | synonymous_variant | 0.18 |
rpoC | 763991 | p.Ile208Leu | missense_variant | 0.19 |
rpoC | 763996 | c.627T>C | synonymous_variant | 0.19 |
rpoC | 764002 | c.633C>G | synonymous_variant | 0.26 |
rpoC | 764005 | c.636G>C | synonymous_variant | 0.26 |
rpoC | 764024 | c.655_657delTTGinsCTC | synonymous_variant | 0.18 |
rpoC | 764032 | p.Asp221Glu | missense_variant | 0.19 |
rpoC | 764040 | p.Ser224Thr | missense_variant | 0.14 |
rpoC | 764059 | c.690G>T | synonymous_variant | 0.22 |
rpoC | 764083 | c.714A>G | synonymous_variant | 0.17 |
rpoC | 764112 | p.Tyr248Phe | missense_variant | 0.17 |
rpoC | 764116 | c.747C>T | synonymous_variant | 0.17 |
rpoC | 764419 | c.1050C>G | synonymous_variant | 0.13 |
rpoC | 764489 | c.1120C>T | synonymous_variant | 0.15 |
rpoC | 764510 | c.1141C>T | synonymous_variant | 0.17 |
rpoC | 764543 | p.Thr392Asp | missense_variant | 0.12 |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.13 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.16 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 0.12 |
rpoC | 764651 | p.Ser428Thr | missense_variant | 0.13 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.14 |
rpoC | 765346 | c.1977C>G | synonymous_variant | 0.14 |
rpoC | 765349 | c.1980T>C | synonymous_variant | 0.15 |
rpoC | 765352 | c.1983G>C | synonymous_variant | 0.15 |
rpoC | 765364 | c.1995G>A | synonymous_variant | 0.12 |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.2 |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.15 |
rpoC | 765529 | c.2160C>T | synonymous_variant | 0.16 |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.21 |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.21 |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.21 |
rpoC | 765559 | c.2190G>C | synonymous_variant | 0.21 |
rpoC | 765580 | c.2211G>C | synonymous_variant | 0.29 |
rpoC | 765613 | p.His748Gln | missense_variant | 0.18 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.23 |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.2 |
rpoC | 765739 | c.2370G>T | synonymous_variant | 0.21 |
rpoC | 765850 | c.2481G>C | synonymous_variant | 0.16 |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.15 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.15 |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.14 |
rpoC | 765937 | c.2568T>C | synonymous_variant | 0.18 |
rpoC | 765947 | c.2578T>C | synonymous_variant | 0.18 |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.25 |
rpoC | 765982 | c.2613C>G | synonymous_variant | 0.24 |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.15 |
rpoC | 766010 | c.2641_2642delTCinsAG | synonymous_variant | 0.19 |
rpoC | 766021 | c.2652G>C | synonymous_variant | 0.18 |
rpoC | 766027 | c.2658G>C | synonymous_variant | 0.13 |
rpoC | 766043 | p.Gln892Glu | missense_variant | 0.13 |
rpoC | 766096 | c.2727G>C | synonymous_variant | 0.17 |
rpoC | 766129 | c.2760C>G | synonymous_variant | 0.19 |
rpoC | 766135 | c.2766G>A | synonymous_variant | 0.18 |
rpoC | 766141 | c.2772C>T | synonymous_variant | 0.16 |
rpoC | 766142 | c.2773C>T | synonymous_variant | 0.15 |
rpoC | 766273 | c.2904T>C | synonymous_variant | 0.15 |
rpoC | 766274 | p.Ala969Thr | missense_variant | 0.15 |
rpoC | 766280 | p.Ser971Gly | missense_variant | 0.15 |
rpoC | 766303 | c.2934C>T | synonymous_variant | 0.17 |
rpoC | 766312 | c.2943T>G | synonymous_variant | 0.14 |
rpoC | 766327 | c.2958C>A | synonymous_variant | 0.26 |
rpoC | 766345 | c.2976T>C | synonymous_variant | 0.24 |
rpoC | 766348 | c.2979A>G | synonymous_variant | 0.21 |
rpoC | 766357 | c.2988C>T | synonymous_variant | 0.22 |
rpoC | 766363 | c.2994G>C | synonymous_variant | 0.2 |
rpoC | 766366 | c.2997C>G | synonymous_variant | 0.2 |
rpoC | 766381 | c.3012C>T | synonymous_variant | 0.2 |
rpoC | 766384 | c.3015A>G | synonymous_variant | 0.18 |
rpoC | 766390 | c.3021C>T | synonymous_variant | 0.17 |
rpoC | 766393 | c.3024C>G | synonymous_variant | 0.17 |
rpoC | 766426 | c.3057C>T | synonymous_variant | 0.14 |
rpoC | 766447 | c.3078T>C | synonymous_variant | 0.13 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.16 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.16 |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.13 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.13 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.16 |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.25 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.13 |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.14 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.14 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.15 |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.15 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 0.94 |
fbiC | 1304715 | c.1785G>C | synonymous_variant | 0.13 |
fbiC | 1304727 | c.1797A>G | synonymous_variant | 0.13 |
fbiC | 1304742 | c.1812T>C | synonymous_variant | 0.17 |
fbiC | 1304748 | c.1818T>C | synonymous_variant | 0.17 |
fbiC | 1304757 | c.1827A>G | synonymous_variant | 0.17 |
fbiC | 1304778 | c.1848T>C | synonymous_variant | 0.17 |
fbiC | 1304784 | c.1854T>C | synonymous_variant | 0.17 |
fbiC | 1304787 | c.1857T>G | synonymous_variant | 0.17 |
fbiC | 1304808 | c.1878C>G | synonymous_variant | 0.18 |
fbiC | 1304811 | c.1881C>G | synonymous_variant | 0.17 |
fbiC | 1304817 | c.1887T>C | synonymous_variant | 0.19 |
fbiC | 1304829 | c.1899T>C | synonymous_variant | 0.18 |
fbiC | 1304832 | c.1902C>T | synonymous_variant | 0.18 |
fbiC | 1304853 | c.1923C>T | synonymous_variant | 0.15 |
fbiC | 1304856 | c.1926C>G | synonymous_variant | 0.14 |
fbiC | 1304907 | c.1977C>G | synonymous_variant | 0.17 |
fbiC | 1304910 | c.1980G>C | synonymous_variant | 0.17 |
fbiC | 1304916 | c.1986T>C | synonymous_variant | 0.16 |
fbiC | 1304928 | c.1998T>C | synonymous_variant | 0.17 |
fbiC | 1304937 | c.2007G>C | synonymous_variant | 0.17 |
fbiC | 1304958 | c.2028T>G | synonymous_variant | 0.29 |
fbiC | 1304983 | c.2053C>T | synonymous_variant | 0.33 |
fbiC | 1304994 | c.2064A>G | synonymous_variant | 0.21 |
fbiC | 1304995 | p.Leu689Met | missense_variant | 0.21 |
fbiC | 1305006 | c.2076A>G | synonymous_variant | 0.21 |
fbiC | 1305012 | c.2082G>C | synonymous_variant | 0.21 |
fbiC | 1305015 | c.2085G>C | synonymous_variant | 0.23 |
fbiC | 1305021 | c.2091C>G | synonymous_variant | 0.18 |
fbiC | 1305030 | c.2100G>C | synonymous_variant | 0.15 |
fbiC | 1305033 | c.2103T>G | synonymous_variant | 0.15 |
fbiC | 1305042 | c.2112A>G | synonymous_variant | 0.14 |
fbiC | 1305045 | c.2115A>G | synonymous_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474956 | n.1299C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474958 | n.1301A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474960 | n.1303C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474963 | n.1306G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474964 | n.1307T>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474965 | n.1308G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474970 | n.1313G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475006 | n.1349A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476031 | n.2374C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476032 | n.2375C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476033 | n.2376T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476034 | n.2377C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476045 | n.2388G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476047 | n.2390G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476048 | n.2391G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476117 | n.2460G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.18 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.43 |
inhA | 1673607 | c.-595T>C | upstream_gene_variant | 0.13 |
fabG1 | 1673615 | p.Glu59Val | missense_variant | 0.13 |
inhA | 1673619 | c.-583T>C | upstream_gene_variant | 0.13 |
fabG1 | 1673633 | p.Ser65Asn | missense_variant | 0.18 |
fabG1 | 1673637 | p.Asp66Glu | missense_variant | 0.19 |
fabG1 | 1673641 | p.Val68Ile | missense_variant | 0.21 |
inhA | 1673646 | c.-556T>C | upstream_gene_variant | 0.21 |
fabG1 | 1673657 | p.Thr73Lys | missense_variant | 0.22 |
inhA | 1673660 | c.-542C>A | upstream_gene_variant | 0.22 |
inhA | 1673664 | c.-538A>C | upstream_gene_variant | 0.19 |
inhA | 1673667 | c.-535A>G | upstream_gene_variant | 0.19 |
inhA | 1673679 | c.-523T>C | upstream_gene_variant | 0.18 |
inhA | 1673685 | c.-517C>T | upstream_gene_variant | 0.18 |
fabG1 | 1673710 | p.Leu91Ile | missense_variant | 0.23 |
fabG1 | 1673716 | p.Ala93Lys | missense_variant | 0.21 |
fabG1 | 1673733 | p.Met98Ile | missense_variant | 0.18 |
inhA | 1673961 | c.-241A>C | upstream_gene_variant | 0.14 |
inhA | 1673985 | c.-217C>G | upstream_gene_variant | 0.15 |
inhA | 1674504 | c.303C>G | synonymous_variant | 0.14 |
inhA | 1674561 | c.360C>T | synonymous_variant | 0.17 |
inhA | 1674582 | c.381T>C | synonymous_variant | 0.15 |
inhA | 1674585 | c.384T>C | synonymous_variant | 0.15 |
inhA | 1674589 | p.Met130Leu | missense_variant | 0.19 |
inhA | 1674601 | p.Leu134Thr | missense_variant | 0.16 |
inhA | 1674624 | c.423A>C | synonymous_variant | 0.12 |
inhA | 1674660 | c.459G>C | synonymous_variant | 0.13 |
inhA | 1674672 | c.471C>G | synonymous_variant | 0.15 |
inhA | 1674718 | c.517A>C | synonymous_variant | 0.16 |
inhA | 1674723 | c.522C>T | synonymous_variant | 0.15 |
inhA | 1674738 | c.537C>G | synonymous_variant | 0.18 |
inhA | 1674741 | c.540C>T | synonymous_variant | 0.18 |
inhA | 1674746 | p.Tyr182Phe | missense_variant | 0.16 |
inhA | 1674750 | c.549T>C | synonymous_variant | 0.17 |
inhA | 1674753 | c.552G>C | synonymous_variant | 0.17 |
inhA | 1674756 | c.555T>C | synonymous_variant | 0.17 |
inhA | 1674759 | c.558G>C | synonymous_variant | 0.18 |
inhA | 1674774 | c.573A>G | synonymous_variant | 0.21 |
inhA | 1674780 | c.579T>G | synonymous_variant | 0.15 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.22 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.33 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.14 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.17 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.15 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.17 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.18 |
rpsA | 1834105 | c.564C>G | synonymous_variant | 0.18 |
rpsA | 1834108 | c.567C>G | synonymous_variant | 0.18 |
rpsA | 1834123 | c.582C>G | synonymous_variant | 0.13 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.17 |
rpsA | 1834231 | c.690T>C | synonymous_variant | 0.17 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.17 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.14 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.25 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.25 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 0.25 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.25 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.26 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.15 |
rpsA | 1834501 | c.960G>C | synonymous_variant | 0.2 |
rpsA | 1834510 | c.969C>T | synonymous_variant | 0.16 |
rpsA | 1834513 | c.972C>G | synonymous_variant | 0.15 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.22 |
rpsA | 1834540 | c.999G>C | synonymous_variant | 0.26 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.32 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.26 |
rpsA | 1834618 | c.1077G>C | synonymous_variant | 0.26 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.22 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.22 |
rpsA | 1834654 | p.Glu371Asp | missense_variant | 0.39 |
rpsA | 1834684 | c.1143C>T | synonymous_variant | 0.35 |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.29 |
rpsA | 1834732 | c.1191T>C | synonymous_variant | 0.2 |
rpsA | 1834733 | p.Ala398Ser | missense_variant | 0.2 |
rpsA | 1834738 | c.1197A>G | synonymous_variant | 0.2 |
rpsA | 1834753 | c.1212T>C | synonymous_variant | 0.16 |
rpsA | 1834942 | c.1401C>T | synonymous_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.35 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.33 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2517950 | c.-165C>G | upstream_gene_variant | 0.17 |
kasA | 2518606 | c.492G>C | synonymous_variant | 0.16 |
kasA | 2518609 | p.Met165Ile | missense_variant | 0.21 |
kasA | 2519153 | p.Ile347Val | missense_variant | 0.19 |
kasA | 2519167 | c.1053T>C | synonymous_variant | 0.15 |
kasA | 2519171 | p.Leu353Val | missense_variant | 0.14 |
kasA | 2519174 | p.Glu354Lys | missense_variant | 0.13 |
kasA | 2519323 | c.1209G>C | synonymous_variant | 0.15 |
kasA | 2519332 | c.1218C>A | synonymous_variant | 0.13 |
kasA | 2519338 | c.1224T>C | synonymous_variant | 0.13 |
kasA | 2519344 | c.1230G>C | synonymous_variant | 0.13 |
kasA | 2519345 | p.Leu411Ile | missense_variant | 0.13 |
ribD | 2987340 | p.Asp168His | missense_variant | 0.12 |
Rv2752c | 3064896 | c.1296T>C | synonymous_variant | 0.17 |
thyX | 3067439 | c.507A>G | synonymous_variant | 0.16 |
thyX | 3067442 | c.504C>T | synonymous_variant | 0.16 |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.16 |
thyX | 3067457 | c.489C>G | synonymous_variant | 0.21 |
thyX | 3067462 | c.484C>T | synonymous_variant | 0.2 |
thyX | 3067465 | p.Ile161Val | missense_variant | 0.2 |
thyX | 3067466 | c.480G>C | synonymous_variant | 0.21 |
thyX | 3067475 | c.471A>G | synonymous_variant | 0.15 |
thyX | 3067490 | c.456C>G | synonymous_variant | 0.2 |
thyX | 3067493 | c.453A>G | synonymous_variant | 0.2 |
thyX | 3067510 | c.436C>T | synonymous_variant | 0.18 |
thyX | 3067515 | p.Ser144Thr | missense_variant | 0.18 |
thyX | 3067661 | c.285C>G | synonymous_variant | 0.17 |
thyX | 3067685 | c.261A>C | synonymous_variant | 0.15 |
thyX | 3067691 | p.Ile85Leu | missense_variant | 0.15 |
thyX | 3067694 | c.252G>C | synonymous_variant | 0.14 |
thyX | 3067736 | c.210C>T | synonymous_variant | 0.21 |
thyX | 3067781 | c.165C>G | synonymous_variant | 0.13 |
thyX | 3067799 | c.147G>A | synonymous_variant | 0.14 |
thyX | 3067802 | c.144C>G | synonymous_variant | 0.14 |
thyX | 3067814 | c.132T>C | synonymous_variant | 0.18 |
thyX | 3067850 | c.96A>C | synonymous_variant | 0.24 |
thyA | 3074127 | c.345G>C | synonymous_variant | 0.12 |
thyA | 3074130 | c.342G>C | synonymous_variant | 0.13 |
thyA | 3074147 | p.Ile109Val | missense_variant | 0.14 |
thyA | 3074172 | c.300G>C | synonymous_variant | 0.13 |
thyA | 3074175 | c.297A>G | synonymous_variant | 0.14 |
thyA | 3074187 | c.285T>C | synonymous_variant | 0.14 |
thyA | 3074205 | p.Glu89Asp | missense_variant | 0.14 |
thyA | 3074214 | c.258T>C | synonymous_variant | 0.14 |
ald | 3087749 | c.930C>G | synonymous_variant | 0.17 |
ald | 3087750 | p.Tyr311Val | missense_variant | 0.15 |
ald | 3087761 | c.942C>G | synonymous_variant | 0.17 |
ald | 3087770 | c.951G>C | synonymous_variant | 0.17 |
fprA | 3474913 | p.Ala303Ser | missense_variant | 0.12 |
fprA | 3474921 | p.Lys305Asn | missense_variant | 0.14 |
fprA | 3474960 | c.954C>G | synonymous_variant | 0.13 |
fprA | 3474975 | c.969C>T | synonymous_variant | 0.14 |
fprA | 3474984 | c.978G>C | synonymous_variant | 0.14 |
fprA | 3474996 | c.990C>G | synonymous_variant | 0.14 |
fbiB | 3642581 | c.1047A>C | synonymous_variant | 0.14 |
fbiB | 3642656 | c.1122G>C | synonymous_variant | 0.14 |
fbiB | 3642659 | c.1125C>G | synonymous_variant | 0.14 |
fbiB | 3642668 | c.1134A>G | synonymous_variant | 0.17 |
fbiB | 3642677 | c.1143A>G | synonymous_variant | 0.22 |
fbiB | 3642680 | c.1146A>G | synonymous_variant | 0.21 |
fbiB | 3642684 | c.1150T>C | synonymous_variant | 0.2 |
fbiB | 3642701 | c.1167C>G | synonymous_variant | 0.22 |
fbiB | 3642719 | c.1185T>C | synonymous_variant | 0.25 |
fbiB | 3642731 | c.1197C>G | synonymous_variant | 0.15 |
fbiB | 3642743 | c.1209T>C | synonymous_variant | 0.15 |
fbiB | 3642781 | p.Val416Ala | missense_variant | 0.12 |
rpoA | 3877743 | c.765T>C | synonymous_variant | 0.18 |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.14 |
rpoA | 3878028 | c.480G>C | synonymous_variant | 0.13 |
rpoA | 3878094 | c.414C>G | synonymous_variant | 0.14 |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.15 |
rpoA | 3878334 | c.174T>C | synonymous_variant | 0.13 |
clpC1 | 4038460 | p.Leu749Met | missense_variant | 0.15 |
clpC1 | 4038486 | p.Gly740Asn | missense_variant | 0.16 |
clpC1 | 4038489 | p.Ala739Gly | missense_variant | 0.16 |
clpC1 | 4038494 | c.2211G>C | synonymous_variant | 0.15 |
clpC1 | 4038497 | p.Ser736Gln | missense_variant | 0.15 |
clpC1 | 4038509 | c.2196C>T | synonymous_variant | 0.15 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.18 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.23 |
clpC1 | 4039004 | c.1701C>G | synonymous_variant | 0.12 |
clpC1 | 4039064 | c.1641C>T | synonymous_variant | 0.25 |
clpC1 | 4039097 | c.1608G>C | synonymous_variant | 0.25 |
clpC1 | 4039103 | c.1602T>C | synonymous_variant | 0.13 |
clpC1 | 4039112 | c.1593C>G | synonymous_variant | 0.15 |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 0.14 |
clpC1 | 4039556 | c.1149G>C | synonymous_variant | 0.16 |
clpC1 | 4039559 | c.1146C>G | synonymous_variant | 0.16 |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.16 |
clpC1 | 4039565 | c.1140G>C | synonymous_variant | 0.15 |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 0.15 |
clpC1 | 4039576 | p.Ala377Pro | missense_variant | 0.16 |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.16 |
clpC1 | 4039589 | c.1116G>C | synonymous_variant | 0.15 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.19 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.19 |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.19 |
clpC1 | 4039661 | c.1044T>G | synonymous_variant | 0.13 |
clpC1 | 4039664 | c.1041G>C | synonymous_variant | 0.15 |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.14 |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.16 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.16 |
clpC1 | 4039988 | c.717C>G | synonymous_variant | 0.15 |
clpC1 | 4039991 | c.714G>C | synonymous_variant | 0.15 |
clpC1 | 4040291 | c.414G>C | synonymous_variant | 0.14 |
embC | 4240726 | c.864G>C | synonymous_variant | 0.17 |
embC | 4241095 | c.1233C>T | synonymous_variant | 0.18 |
embC | 4241107 | c.1245G>C | synonymous_variant | 0.24 |
embC | 4241140 | c.1278A>G | synonymous_variant | 0.21 |
embC | 4241146 | c.1284C>G | synonymous_variant | 0.22 |
embC | 4241158 | c.1296T>C | synonymous_variant | 0.2 |
embC | 4241161 | c.1299C>G | synonymous_variant | 0.2 |
embC | 4241162 | c.1300T>C | synonymous_variant | 0.21 |
embC | 4241170 | c.1308G>C | synonymous_variant | 0.21 |
embC | 4241173 | c.1311C>T | synonymous_variant | 0.2 |
embC | 4241179 | c.1317G>A | synonymous_variant | 0.2 |
embC | 4241203 | c.1341T>C | synonymous_variant | 0.19 |
embC | 4241206 | c.1344G>C | synonymous_variant | 0.19 |
embC | 4241218 | c.1356G>C | synonymous_variant | 0.15 |
embC | 4241230 | c.1368A>G | synonymous_variant | 0.16 |
embC | 4241233 | c.1371G>C | synonymous_variant | 0.16 |
embC | 4241488 | c.1626G>C | synonymous_variant | 0.21 |
embC | 4241496 | p.Ala545Gly | missense_variant | 0.22 |
embC | 4241500 | c.1638A>C | synonymous_variant | 0.22 |
embC | 4241501 | p.Ser547Thr | missense_variant | 0.22 |
embC | 4241506 | c.1644G>C | synonymous_variant | 0.2 |
embC | 4241518 | c.1656A>G | synonymous_variant | 0.25 |
embC | 4241521 | c.1659T>C | synonymous_variant | 0.25 |
embC | 4241530 | c.1668C>G | synonymous_variant | 0.29 |
embC | 4241536 | c.1674A>G | synonymous_variant | 0.31 |
embC | 4241539 | c.1677T>C | synonymous_variant | 0.31 |
embC | 4241545 | c.1683T>C | synonymous_variant | 0.31 |
embC | 4241548 | c.1686T>C | synonymous_variant | 0.31 |
embC | 4241551 | c.1689A>G | synonymous_variant | 0.31 |
embC | 4241567 | p.Ile569Val | missense_variant | 0.33 |
embC | 4241572 | c.1710C>G | synonymous_variant | 0.28 |
embC | 4241578 | c.1716G>C | synonymous_variant | 0.24 |
embC | 4241584 | c.1722T>C | synonymous_variant | 0.24 |
embC | 4241587 | c.1725C>G | synonymous_variant | 0.24 |
embC | 4241591 | p.Leu577Val | missense_variant | 0.27 |
embC | 4241611 | c.1749G>C | synonymous_variant | 0.29 |
embC | 4241614 | c.1752A>C | synonymous_variant | 0.29 |
embC | 4241626 | c.1764T>C | synonymous_variant | 0.23 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244632 | p.Thr467Ile | missense_variant | 0.12 |
embA | 4245458 | p.Glu742Asp | missense_variant | 0.17 |
embB | 4245737 | c.-777A>C | upstream_gene_variant | 0.15 |
embB | 4245740 | c.-774T>C | upstream_gene_variant | 0.15 |
embB | 4246256 | c.-258G>T | upstream_gene_variant | 0.14 |
embB | 4246259 | c.-255G>C | upstream_gene_variant | 0.18 |
embA | 4246264 | p.His1011Arg | missense_variant | 0.12 |
embB | 4246292 | c.-222A>G | upstream_gene_variant | 0.19 |
embA | 4246305 | p.Ser1025Glu | missense_variant | 0.2 |
embA | 4246308 | p.Thr1026Ala | missense_variant | 0.22 |
embB | 4246316 | c.-198T>G | upstream_gene_variant | 0.25 |
embB | 4246319 | c.-195G>C | upstream_gene_variant | 0.25 |
embA | 4246329 | p.Thr1033Ala | missense_variant | 0.14 |
embA | 4246359 | p.Ala1043Ser | missense_variant | 0.17 |
embB | 4246367 | c.-147C>T | upstream_gene_variant | 0.17 |
embB | 4246373 | c.-141T>C | upstream_gene_variant | 0.19 |
embB | 4246376 | c.-138G>C | upstream_gene_variant | 0.19 |
embB | 4246379 | c.-135C>T | upstream_gene_variant | 0.18 |
embB | 4246400 | c.-114G>C | upstream_gene_variant | 0.18 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.2 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.27 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.27 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.25 |
embB | 4247512 | c.999T>C | synonymous_variant | 0.14 |
embB | 4247776 | c.1263G>T | synonymous_variant | 0.15 |
embB | 4247797 | c.1284C>G | synonymous_variant | 0.16 |
embB | 4247800 | c.1287A>T | synonymous_variant | 0.15 |
embB | 4247803 | c.1290G>C | synonymous_variant | 0.15 |
embB | 4247815 | c.1302C>G | synonymous_variant | 0.2 |
embB | 4247819 | p.Val436Ile | missense_variant | 0.23 |
embB | 4247830 | c.1317A>G | synonymous_variant | 0.15 |
embB | 4247836 | c.1323A>G | synonymous_variant | 0.19 |
embB | 4247839 | c.1326G>C | synonymous_variant | 0.17 |
embB | 4247866 | c.1353G>C | synonymous_variant | 0.23 |
embB | 4247875 | c.1362G>C | synonymous_variant | 0.2 |
embB | 4247876 | c.1363C>T | synonymous_variant | 0.2 |
embB | 4247881 | c.1368G>C | synonymous_variant | 0.21 |
embB | 4247887 | c.1374C>T | synonymous_variant | 0.21 |
embB | 4247893 | c.1380C>T | synonymous_variant | 0.24 |
embB | 4247899 | p.Met462Ile | missense_variant | 0.22 |
embB | 4247905 | c.1392G>C | synonymous_variant | 0.23 |
embB | 4247909 | c.1396T>C | synonymous_variant | 0.24 |
embB | 4247914 | c.1401G>C | synonymous_variant | 0.29 |
embB | 4247932 | c.1419C>G | synonymous_variant | 0.26 |
embB | 4247940 | p.Leu476Trp | missense_variant | 0.26 |
embB | 4247945 | c.1432T>C | synonymous_variant | 0.26 |
embB | 4247951 | p.Ser480Ala | missense_variant | 0.25 |
embB | 4247956 | c.1443G>C | synonymous_variant | 0.25 |
embB | 4247974 | c.1461C>G | synonymous_variant | 0.16 |
embB | 4248007 | c.1494C>G | synonymous_variant | 0.16 |
embB | 4248011 | p.Ser500Arg | missense_variant | 0.13 |
embB | 4248014 | p.Thr501Ala | missense_variant | 0.14 |
embB | 4248070 | c.1557T>C | synonymous_variant | 0.14 |
embB | 4248097 | c.1584C>G | synonymous_variant | 0.16 |
embB | 4248130 | c.1617G>C | synonymous_variant | 0.15 |
embB | 4248172 | c.1659G>C | synonymous_variant | 0.17 |
embB | 4248199 | c.1686A>G | synonymous_variant | 0.14 |
embB | 4248200 | p.Ile563Val | missense_variant | 0.14 |
embB | 4248205 | c.1692C>G | synonymous_variant | 0.13 |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.13 |
embB | 4249704 | p.Leu1064Pro | missense_variant | 0.22 |
aftB | 4267244 | c.1593T>C | synonymous_variant | 0.15 |
aftB | 4267256 | c.1581C>G | synonymous_variant | 0.15 |
aftB | 4267262 | c.1575T>C | synonymous_variant | 0.15 |
aftB | 4267266 | p.Ala524Gly | missense_variant | 0.14 |
aftB | 4267268 | c.1569T>C | synonymous_variant | 0.15 |
aftB | 4269042 | c.-206G>C | upstream_gene_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |