Rv0006 - c.-538C>T


Drug resistance types
44 Sensitive 0 RR-TB 9 HR-TB 6 MDR-TB 0 Pre-XDR-TB 2 XDR-TB 21 Other
lineage Counts
lineage Count
lineage4.9 42
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
1
lineage2.2.1.1 1
lineage3.1.2 4
lineage2.2.1 3
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage4.9;lineage6.1.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La1.6;La3;M.canetti;lineage4.2.2 1
lineage4.1.2.1 4
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage1.1.3 1
lineage4.1.1.1 1
lineage4.3.4 1
lineage4 3
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.3.1;lineage4.9;lineage6 1
lineage4.6.3;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.8 1
M.canetti;lineage4.2 1
M.canetti;lineage2.2 2
lineage4.1;lineage4.9 1
lineage4.3.4.2.1 1
lineage1.1.2 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
spoligotype Counts
spoligotype Count
None 82
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR373947 Other lineage4.9 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR6359082 Other lineage4.9 None
ERR349296 Sensitive lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR212001 HR-TB None
SRR25534301 HR-TB lineage2.2.1.1 None
SAMN02599119 Sensitive lineage3.1.2 in
SRR6280261 Sensitive lineage2.2.1 cn
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR369162 Other lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4178309 Other lineage4.1.2.1 None
ERR363449 Sensitive lineage4.9 None
ERR363474 Sensitive lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
SRR3675209 Sensitive lineage4.9 None
ERR349299 Other lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR363447 Other lineage4.9 None
SRR6045706 Sensitive lineage4.9 None
ERR349266 Sensitive lineage4.9 None
SRR1173644 Sensitive lineage3.1.2 None
ERR363456 Sensitive lineage4.9 None
ERR349264 Sensitive lineage4.9 None
ERR349330 Sensitive lineage4.9 None
ERR363446 Sensitive lineage4.9 None
ERR363500 Sensitive lineage4.9 None
SRR28859622 Sensitive lineage1.1.3 None
ERR4816113 Sensitive lineage4.1.1.1 None
ERR363453 Sensitive lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
ERR369163 Sensitive lineage4.9 None
ERR369158 Other lineage4.9 None
ERR363498 Sensitive lineage4.9 None
SRR3675265 Other lineage4 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR363506 Sensitive lineage4.9 None
ERR363490 Sensitive lineage4.9 None
ERR363421 Sensitive lineage4.9 None
ERR4799025 Other lineage4.8 None
ERR373945 Sensitive lineage4.9 None
ERR349265 Other lineage4.9 None
ERR6865502 Sensitive lineage4 None
ERR4178226 Sensitive lineage4 None
SRR6045371 Other lineage4.9 None
SRR3675260 Sensitive lineage4.9 None
ERR363499 Sensitive lineage4.9 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR363502 Other lineage4.9 None
SRR8380934 HR-TB lineage3.1.2 in
ERR373946 Sensitive lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR1710075 Sensitive lineage2.2.1 cn
ERR369159 Sensitive lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR736875 HR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR6045503 Sensitive lineage4.9 None
SRR21733170 Sensitive lineage4.1.2.1 None
ERR4798431 Sensitive lineage4.1;lineage4.9 None
ERR161034 HR-TB lineage4.3.4.2.1 None
SRR6046863 Sensitive lineage1.1.2 None
SRR3675292 Sensitive lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR349300 Sensitive lineage4.9 None
ERR363479 Sensitive lineage4.9 None
SRR6280337 Sensitive lineage2.2.1 cn
ERR363426 Sensitive lineage4.9 None
SRR6046897 Sensitive lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR363509 Sensitive lineage4.9 None
SRR1173839 Sensitive lineage3.1.2 None
ERR369160 Sensitive lineage4.9 None
ERR363445 Other lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None