Rv0006 - c.-538C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
47 Sensitive
0 RR-TB
8 HR-TB
6 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 45 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage3.1.2 | 4 |
| lineage2.2.1.1 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.3.4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4 | 3 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage2.2.1 | 4 |
| lineage4.8 | 1 |
| lineage1.1.3 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage4.2 | 1 |
| 1 | |
| M.canetti;lineage2.2 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 86 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045371 | Other | lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR6046802 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR1173644 | Sensitive | lineage3.1.2 | None | SRR25534301 | HR-TB | lineage2.2.1.1 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR21733170 | Sensitive | lineage4.1.2.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR369162 | Other | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR1173839 | Sensitive | lineage3.1.2 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SAMN02599119 | Sensitive | lineage3.1.2 | in | ERR369159 | Sensitive | lineage4.9 | None | SRR1710075 | Sensitive | lineage2.2.1 | cn | SRR6280261 | Sensitive | lineage2.2.1 | cn | SRR6280337 | Sensitive | lineage2.2.1 | cn | SRR6280154 | Sensitive | lineage2.2.1 | cn | ERR363500 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR28859622 | Sensitive | lineage1.1.3 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR8380934 | HR-TB | lineage3.1.2 | in | ERR363447 | Other | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR212001 | HR-TB | None | ERR349264 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR3675265 | Other | lineage4 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None |
|---|
