Rv2477c - c.1284A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
3 Sensitive
1 RR-TB
29 HR-TB
4 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
31 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 9 |
| lineage4 | 2 |
| 10 | |
| lineage4.1.2.1 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage2.2.1 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.1.3 | 2 |
| lineage4.8 | 1 |
| lineage6 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| La3;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage3.1.1 | 1 |
| lineage4.1.2 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 70 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3797015 | HR-TB | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4811105 | HR-TB | None | ERR4811075 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR990545 | Other | lineage3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR9787197 | Other | None | ERR234659 | Other | None | ERR9786671 | Other | None | ERR9786604 | Other | None | SRR1180137 | Other | lineage2.2.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR6358991 | HR-TB | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR4817893 | Other | lineage4.8 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786843 | Other | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4810741 | HR-TB | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR12882362 | Sensitive | lineage3.1.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR1165628 | Other | La3;lineage4.9 | None |
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