Rv3245c - c.456C>T
Drug resistance types
4 Sensitive
4 RR-TB
23 HR-TB
25 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
46 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.2.2 | 23 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.6.1.1 | 1 |
| lineage2.1 | 3 |
| lineage2.1;lineage4.9 | 8 |
| lineage2.2.1 | 3 |
| lineage4.1.2.1 | 4 |
| lineage4.9 | 11 |
| lineage1.2.2.1;lineage4.4.1.1 | 1 |
| La3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| lineage1.2.2.2;lineage4.3.4.2.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| 8 | |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage1.1.2;lineage1.2.2.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.2.BCG | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
| La3;lineage1.1.2 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.1;lineage4.3.2 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.8 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 104 |
Geographic prevalence
Country level data for this variant is available for 14 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR181930 | MDR-TB | lineage1.2.2.2 | mw | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR245836 | MDR-TB | lineage1.2.2.2 | mw | ERR736820 | MDR-TB | lineage1.2.2.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR1172728 | RR-TB | La3 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR164021 | MDR-TB | lineage1.2.2.2;lineage4.3.4.2.1 | mw | ERR245829 | MDR-TB | lineage1.2.2.2 | mw | ERR7902711 | HR-TB | lineage1.2.2.2 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR245651 | MDR-TB | lineage1.2.2.2 | mw | SRR3675572 | Other | None | ERR9786671 | Other | None | ERR234659 | HR-TB | None | SRR7496517 | Other | None | ERR9787197 | Other | None | SRR3675236 | Other | None | ERR11488696 | MDR-TB | lineage1.2.2.2 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR245670 | MDR-TB | lineage1.2.2.2 | mw | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR181793 | MDR-TB | lineage1.2.2.2 | mw | ERR779679 | MDR-TB | lineage1.2.2.2 | None | ERR163947 | MDR-TB | lineage1.1.2;lineage1.2.2.2 | mw | ERR736807 | MDR-TB | lineage1.2.2.2 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR221596 | MDR-TB | lineage1.2.2.2 | mw | SRR3675214 | Other | lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR7821093 | Sensitive | lineage1.2.2.2 | None | ERR163962 | MDR-TB | lineage1.2.2.2 | mw | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR7535086 | Other | None | ERR773802 | MDR-TB | lineage1.2.2.2 | None | ERR181933 | MDR-TB | lineage1.2.2.2 | mw | ERR4798262 | HR-TB | La1.2.BCG | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR212054 | MDR-TB | lineage1.2.2.2 | mw | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR161085 | MDR-TB | lineage1.2.2.2 | mw | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4818394 | Sensitive | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR19428621 | MDR-TB | lineage1.2.2.2 | None | ERR1063861 | MDR-TB | lineage1.2.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | ERR126605 | MDR-TB | lineage1.2.2.2 | mw | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11252519 | Sensitive | lineage1.2.2.2 | None | ERR9786604 | Other | None | ERR11466551 | Sensitive | lineage1.2.2.2 | None | SRR3675441 | RR-TB | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR6045555 | Other | lineage4.9 | None |
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