lineage | Count |
---|---|
124 | |
lineage2 | 4 |
La1 | 1 |
lineage3 | 1 |
lineage4.3.4 | 1 |
lineage4.1.3 | 2 |
lineage4.3.2 | 1 |
lineage4 | 14 |
lineage4.9 | 5 |
lineage4.3.3 | 2 |
lineage2.2.1 | 5 |
lineage3.1 | 3 |
lineage4.5 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.3 | 1 |
lineage2.2 | 2 |
lineage4.8 | 1 |
lineage4;lineage3.1 | 1 |
spoligotype | Count |
---|---|
None | 173 |
ID | Drug resistance | Lineage | Country iso2 | ERR4769452 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4769450 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4800341 | Other | lineage3 | None | ERR6358991 | HR-TB | None | ERR4810741 | HR-TB | None | ERR6358837 | HR-TB | None | ERR4811022 | HR-TB | None | ERR5336148 | Other | None | ERR702406 | HR-TB | None | ERR702404 | HR-TB | None | ERR736835 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736848 | HR-TB | None | ERR736839 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9117709 | HR-TB | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | SRR1167384 | Other | lineage4 | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172857 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173118 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173629 | Other | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173778 | Other | None | SRR1175074 | MDR-TB | None | SRR1184388 | Other | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR12416824 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR14782405 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR3675465 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR176778 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | ERR176779 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR158583 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR181824 | HR-TB | lineage4 | None | ERR4816585 | Other | lineage2.2 | None | ERR181887 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | ERR212121 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675311 | Other | None | ERR176651 | HR-TB | None | ERR4816999 | Other | None | ERR212001 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR234659 | HR-TB | None | ERR2229414 | Sensitive | lineage4.8 | None | SRR5341302 | HR-TB | None | SRR5341418 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | ERR2693239 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693231 | Other | None | SRR5535933 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6045892 | Sensitive | None | SRR6045952 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046781 | Sensitive | lineage2 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR294248 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR502532 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | ERR323043 | HR-TB | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR502889 | Other | None | ERR323108 | HR-TB | lineage4 | None | ERR323045 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323055 | HR-TB | None | ERR067681 | HR-TB | None | ERR3283047 | HR-TB | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR3283024 | Other | None | ERR3283027 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283036 | HR-TB | None | ERR1034634 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283028 | Other | None | ERR3283032 | HR-TB | None | ERR3797044 | Other | None | ERR3445503 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797046 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR403298 | HR-TB | lineage4 | None | ERR405209 | Sensitive | lineage4 | None |
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