Run ID: SRR18053779
Sample name:
Date: 03-04-2023 19:15:42
Number of reads: 1771235
Percentage reads mapped: 74.02
Strain: La1.7.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.7 | M.bovis | None | None | 1.0 |
La1.7.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472181 | n.336G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472223 | n.378C>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472544 | n.699C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472574 | n.729T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472579 | n.734G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472592 | n.747C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472659 | n.814G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472672 | n.828_838delTTTCCTTCCTT | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472690 | n.845C>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472698 | n.853A>C | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472701 | n.856T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472715 | n.870C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472719 | n.874G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472733 | n.888G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472742 | n.897C>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476359 | n.2702C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476381 | n.2724G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476427 | n.2770G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.1 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fbiA | 3640636 | p.Ser32Pro | missense_variant | 1.0 |
fbiB | 3642478 | p.Asp315Ala | missense_variant | 1.0 |
rpoA | 3878559 | c.-124_-53delCGAGTACCCCCCAACCCAACCCTCGGGGGGCGCCGCCCCCCGAGTACCCCCACCCTCGGGGGCGCCGCCCCC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |