Rv0001 - c.1003C>T


Drug resistance types
0 Sensitive 5 RR-TB 10 HR-TB 14 MDR-TB 1 Pre-XDR-TB 0 XDR-TB 46 Other
lineage Counts
lineage Count
lineage4.6.2.2 1
lineage4.1.2.1 3
11
lineage4.9 10
La1.7;M.canetti;lineage4.9 1
lineage4.9;lineage7 2
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 1
lineage6.3.1 1
lineage2.1;lineage4.9;lineage6.3 4
lineage2.1;lineage4.9 8
La1.6;La3;M.canetti;lineage4.2.2 1
La1.2.BCG;La1.8.1 1
lineage4 2
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage2.1;lineage6.3 2
lineage2.1;lineage4.9;lineage7 1
M.canetti;lineage4.2;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.6.4;lineage4.9 1
lineage4.9;lineage6.3 2
lineage4.1.3 2
lineage1.2.2.2 1
lineage4.3.2 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.7;lineage4.9 2
lineage2.2.1 4
lineage4.8.1 1
lineage2.1 1
La3;lineage2.1;lineage4.9;lineage6.3 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
M.canetti;lineage4.2 1
spoligotype Counts
spoligotype Count
None 76
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR9786645 Other lineage4.6.2.2 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675572 Other None
ERR9786671 Other None
SRR7496517 Other None
SRR3675236 Other None
SRR3675275 Other lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR9787139 Other lineage6.3.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR387051 RR-TB lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR6046066 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR181824 MDR-TB lineage4.9 None
SRR7496509 Other None
ERR4407463 HR-TB None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
ERR3797069 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR3283044 Other lineage4 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR3675586 RR-TB M.canetti;lineage4.6.4;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR3804169 HR-TB lineage4.1.3 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR7496472 Other lineage4.9 None
ERR9117805 Other lineage4.3.2 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9786604 Other None
ERR9117709 Other None
SRR6789626 Other None
SRR18213713 HR-TB None
ERR4816999 Other None
SRR6045795 Other lineage2.2.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4817896 HR-TB lineage2.2.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR6046382 RR-TB lineage2.2.1 None
ERR3797070 Other lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR9786611 HR-TB lineage4.1.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR6045380 Other lineage2.1;lineage4.9 None