lineage | Count |
---|---|
lineage2.2.1 | 2 |
lineage2.2 | 3 |
lineage2.1 | 1 |
lineage4.8 | 1 |
lineage4.1 | 1 |
79 | |
lineage4.1.1.3 | 2 |
lineage4.9 | 6 |
lineage4.1.1.3.1 | 1 |
lineage4 | 4 |
lineage3.1 | 2 |
La2 | 1 |
lineage4.1.2.1 | 2 |
La1.2 | 1 |
lineage3.1.2 | 1 |
lineage1.1.3.1 | 1 |
spoligotype | Count |
---|---|
None | 108 |
ID | Drug resistance | Lineage | Country iso2 | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR22251329 | Other | lineage2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR21673294 | Other | lineage4.8 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675482 | HR-TB | None | SRR3675502 | Other | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675488 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675550 | Other | None | SRR3675270 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675222 | Other | None | SRR3675558 | HR-TB | None | ERR278594 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR5341330 | HR-TB | None | SRR6045450 | Other | lineage4.9 | None | ERR2693239 | HR-TB | None | SRR6045519 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR2514008 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR5341418 | Other | None | SRR5341470 | HR-TB | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045053 | Other | None | SRR6044838 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6046482 | HR-TB | None | SRR6045399 | Other | None | SRR6325444 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502524 | HR-TB | La2 | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | ERR4831117 | HR-TB | None | ERR323055 | HR-TB | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR067681 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR1034652 | Other | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283032 | HR-TB | None | ERR1063862 | HR-TB | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR133986 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3439432 | Other | None | ERR3797083 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4798406 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR736865 | HR-TB | None | ERR4811493 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6866410 | Sensitive | None | ERR6358837 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR987722 | HR-TB | None | ERR8976043 | HR-TB | None | SRR10808399 | Sensitive | lineage4 | None | SRR14782405 | HR-TB | None | SRR1640750 | HR-TB | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | SRR1174897 | HR-TB | None | SRR13861663 | Sensitive | lineage4.9 | None |
---|