Rv1484 - c.-76G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
26 Sensitive
2 RR-TB
20 HR-TB
3 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
58 Other
lineage Counts
| lineage | Count |
|---|---|
| 16 | |
| lineage2.1;lineage4.9 | 6 |
| lineage6.3.1 | 1 |
| lineage4.9 | 49 |
| lineage2.2.1 | 5 |
| La3 | 2 |
| La3;lineage4.9 | 6 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage3.1 | 1 |
| La3;lineage4 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| lineage4.1.3 | 2 |
| lineage2.1 | 2 |
| lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.8 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 110 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811142 | RR-TB | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR7535086 | Other | None | ERR4816585 | Other | lineage2.2.1 | None | SRR1172728 | RR-TB | La3 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR234659 | Other | None | ERR349330 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4810741 | HR-TB | None | ERR4811075 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR12416824 | HR-TB | None | ERR363499 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR702406 | Other | lineage2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR349264 | Sensitive | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR369158 | Other | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR2027263 | Other | lineage4 | None | ERR212123 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4811311 | Other | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR4817893 | Other | lineage4.8 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR363447 | Other | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR9786671 | Other | None | ERR9786604 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4819241 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | SRR6789626 | Other | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR502912 | Other | lineage2.2.1 | None |
|---|
