Rv1854c - c.171A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
0 RR-TB
41 HR-TB
6 MDR-TB
0 Pre-XDR-TB
1 XDR-TB
29 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage4.9 | 15 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9 | 3 |
| lineage4.1.2.1 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.1;lineage4.9 | 3 |
| La1.7;lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| 5 | |
| lineage4.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.2.1 | 4 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage4.1.1.1 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage2.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1;lineage9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 82 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR28239575 | Sensitive | lineage4.1.2.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR29096150 | Other | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR6358991 | HR-TB | None | ERR4811311 | Other | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR29097026 | Other | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None |
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