lineage | Count |
---|---|
lineage4.4.1.1 | 2 |
100 | |
lineage2.2 | 2 |
lineage4.9 | 7 |
lineage4;lineage1.1.2 | 1 |
lineage2.2.1 | 4 |
La2 | 1 |
lineage4.1.2.1 | 3 |
lineage3.1 | 4 |
La1 | 1 |
La1.8.1 | 1 |
lineage2 | 2 |
lineage4 | 4 |
lineage3 | 1 |
lineage4.3.2 | 1 |
lineage4.3.3 | 2 |
lineage4.5 | 1 |
lineage4.1 | 1 |
lineage4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 139 |
ID | Drug resistance | Lineage | Country iso2 | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4819945 | Sensitive | lineage4.9 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR234659 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4819781 | Other | lineage2.2.1 | None | SRR5341418 | Other | None | SRR5341302 | HR-TB | None | ERR2693231 | Other | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341333 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693230 | Other | None | ERR2693239 | HR-TB | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6045327 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045053 | Other | None | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325444 | HR-TB | None | ERR502524 | HR-TB | La2 | None | SRR6046540 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR294248 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR323036 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR502889 | Other | None | ERR323041 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323038 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR1034652 | Other | None | ERR1034634 | HR-TB | None | ERR3283008 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR133986 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283027 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283024 | Other | None | ERR3283036 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797061 | Other | None | ERR3468544 | HR-TB | None | ERR3797014 | Other | None | ERR3797044 | Other | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4188350 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR4798406 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR736835 | HR-TB | None | ERR6358837 | HR-TB | None | ERR5336148 | Other | None | ERR6358991 | HR-TB | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736874 | HR-TB | None | SRR1172817 | HR-TB | None | ERR8976043 | HR-TB | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1169194 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1184381 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1173788 | Other | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR1196768 | MDR-TB | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR19303884 | HR-TB | None | SRR25827682 | Other | None | ERR4815604 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675236 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675234 | Other | None | SRR3675383 | HR-TB | None | SRR3675558 | HR-TB | None | ERR1750908 | Sensitive | lineage4 | None | ERR2027263 | Other | lineage4 | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | ERR4817060 | RR-TB | None |
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