Rv2245 - c.460_462delATCinsGG
Drug resistance types
0 Sensitive
17 RR-TB
24 HR-TB
44 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
31 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage2.2.1 | 4 |
| lineage4.7 | 1 |
| lineage2.1;lineage6.3 | 1 |
| lineage4.9 | 17 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage1.1.2 | 1 |
| lineage3 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 13 |
| lineage2.1;lineage4.9 | 6 |
| lineage4.6.2.2 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage4.1.2.1 | 3 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 2 |
| lineage2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage1.1 | 1 |
| lineage4.3.3 | 2 |
| 4 | |
| lineage4.8 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage2.2 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4 | 2 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 1 |
| lineage4.3.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage4.2 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| lineage3.1;lineage9 | 1 |
| La3;lineage4.8 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 119 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR4819932 | Other | lineage4.7 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4821053 | RR-TB | lineage3 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3275215 | RR-TB | lineage4.1.2.1 | nl | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | SRR6046485 | Other | lineage4.9 | None | ERR9119096 | RR-TB | lineage4.3.3 | None | SRR1184381 | MDR-TB | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2514692 | Other | None | ERR9787197 | Other | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675275 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1196677 | Other | lineage2.2 | None | ERR9896144 | Other | lineage3 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR13861332 | Other | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | ERR5908228 | RR-TB | lineage4.3.3 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR4817060 | Other | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
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