Rv0005 - c.1302C>T
Drug resistance types
15 Sensitive
2 RR-TB
14 HR-TB
14 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
21 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2;lineage4.9 | 2 |
| La1.7;lineage4.9 | 2 |
| lineage4.9 | 8 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.2 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.1.2.1 | 12 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.6.2.2 | 3 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| 5 | |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage6.3 | 1 |
| lineage2.1 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4.8 | 1 |
| lineage3 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage6.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 66 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SAMEA2535040 | Sensitive | lineage4.1.2.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4831159 | Sensitive | lineage4.1.2.1 | de | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR11049727 | Sensitive | lineage4.1.2.1 | None | ERR11049377 | Sensitive | lineage4.1.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9787165 | Other | lineage6.1.3 | None | ERR9786671 | Other | None | ERR9787197 | Other | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR702406 | Other | lineage2.1 | None | ERR552968 | Sensitive | lineage4.1.2.1 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR11081595 | Sensitive | lineage4.1.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR551665 | Sensitive | lineage4.1.2.1 | cg | ERR551666 | Sensitive | lineage4.1.2.1 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR11082160 | Sensitive | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341456 | Other | lineage4.9 | None | ERR552969 | Sensitive | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786843 | Other | None | SRR6789626 | Other | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR228218 | Sensitive | lineage3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR2100572 | Sensitive | lineage3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR028319 | Sensitive | lineage4.1.2.1 | None | ERR234175 | Sensitive | lineage4.1.2.1 | de | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR9787030 | RR-TB | lineage6.1.2 | None | ERR3283021 | MDR-TB | lineage4.9 | None |
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