lineage | Count |
---|---|
77 | |
lineage4.3 | 1 |
lineage4.9 | 2 |
lineage2.2.1 | 7 |
La3 | 2 |
lineage2.2 | 3 |
lineage5.2 | 2 |
lineage4.6.2.2 | 2 |
lineage4 | 2 |
lineage4.3.4.2.1 | 1 |
La2 | 1 |
lineage3 | 2 |
lineage2 | 2 |
lineage1.2.2.1 | 1 |
lineage4.3.2 | 1 |
lineage4.1.2.1 | 2 |
lineage4.8;lineage4.1 | 1 |
lineage3.1 | 1 |
lineage1.2.1.2 | 1 |
lineage3.1.1 | 1 |
lineage4.5 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.1 | 1 |
lineage4.9;La3 | 1 |
spoligotype | Count |
---|---|
None | 116 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675545 | HR-TB | None | SRR3675236 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675486 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | ERR212001 | HR-TB | None | ERR4817037 | Other | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR212033 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675574 | HR-TB | None | SRR3742665 | HR-TB | None | SRR5341302 | HR-TB | None | ERR234659 | HR-TB | None | ERR2693239 | HR-TB | None | SRR5341333 | HR-TB | None | ERR2515051 | Sensitive | La3 | None | SRR6046133 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6044790 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6046225 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR323063 | HR-TB | None | ERR294248 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR7496517 | Other | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | SRR7496509 | Other | None | ERR323043 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283027 | HR-TB | None | ERR4811022 | HR-TB | None | ERR3797069 | Other | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR6358837 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR4811105 | HR-TB | None | ERR736874 | HR-TB | None | ERR736839 | Other | None | ERR702406 | HR-TB | None | ERR736867 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR7821210 | Sensitive | lineage1.2.2.1 | None | ERR9117709 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786843 | Other | None | ERR990545 | Other | lineage3 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1172234 | Other | None | SRR1172817 | HR-TB | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172728 | MDR-TB | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1181289 | Other | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142341 | HR-TB | None | SRR19428515 | Sensitive | lineage3.1.1 | None | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR3675482 | HR-TB | None | SRR25827682 | Other | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR3675465 | HR-TB | None | ERR161033 | HR-TB | None |
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