Rv0701 - p.Thr71Ala
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
12 Sensitive
5 RR-TB
55 HR-TB
31 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
35 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1 | 36 |
| lineage3;lineage4.1 | 1 |
| lineage4.1;lineage4.8 | 1 |
| lineage4.9 | 24 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage2.1;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 8 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| 12 | |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage2.2.1 | 4 |
| lineage4.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.1.2.1 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.8 | 2 |
| lineage4.1.3 | 2 |
| La1;lineage2;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1;lineage4.1 | 2 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage2.2.1;lineage4.1;lineage4.3.3 | 1 |
| lineage1.1 | 1 |
| lineage4 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 140 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2516967 | MDR-TB | lineage4.1 | gb | ERR2516745 | MDR-TB | lineage3;lineage4.1 | gb | ERR133938 | Pre-XDR-TB | lineage4.1;lineage4.8 | ru | ERR323062 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR24256284 | MDR-TB | lineage4.1 | None | SRR21798438 | HR-TB | lineage4.1 | None | ERR2600568 | HR-TB | lineage4.1 | None | SRR1002681 | Other | lineage4.1 | None | SRR10380082 | HR-TB | lineage4.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR28239564 | HR-TB | lineage4.1 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11068112 | MDR-TB | lineage4.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR29539000 | MDR-TB | lineage4.1 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR24255903 | MDR-TB | lineage4.1 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR11068542 | MDR-TB | lineage4.1 | None | ERR9786604 | Other | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR21690352 | HR-TB | lineage4.1 | None | ERR2600398 | HR-TB | lineage4.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR1063896 | Sensitive | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18715244 | HR-TB | lineage4.1 | None | SRR25395667 | HR-TB | lineage4.1 | None | SRR29539700 | MDR-TB | lineage4.1 | None | ERR4799025 | Other | lineage4.8 | None | SRR14782054 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4810741 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4811142 | RR-TB | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR10379936 | HR-TB | lineage4.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR2600469 | HR-TB | lineage4.1 | None | SRR6831964 | HR-TB | lineage4.1 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR2600468 | HR-TB | lineage4.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR3675494 | RR-TB | lineage4.9 | None | SRR29539543 | MDR-TB | lineage4.1 | None | SRR6832734 | MDR-TB | lineage4.1 | None | ERR2600490 | MDR-TB | lineage4.1 | None | ERR2600452 | HR-TB | lineage4.1 | None | SRR7496472 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR234659 | Other | None | SRR10808730 | Other | lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR18149436 | Sensitive | lineage3.1.2 | None | ERR2600590 | HR-TB | lineage2.2.1;lineage4.1 | None | ERR133937 | Pre-XDR-TB | lineage4.1 | ru | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR1640750 | Other | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR18714929 | MDR-TB | lineage4.1 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18715093 | HR-TB | lineage4.1 | None | ERR2600544 | MDR-TB | lineage2.2.1;lineage4.1;lineage4.3.3 | None | SRR29539724 | MDR-TB | lineage4.1 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6257038 | Other | lineage4.1 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2600567 | HR-TB | lineage4.1 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2600451 | HR-TB | lineage4.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR3077978 | Other | lineage1.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR12015083 | Other | lineage4.8 | None | ERR2027263 | Other | lineage4 | None | SRR6832663 | HR-TB | lineage4.1 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR6832145 | HR-TB | lineage4.1 | None | ERR13285569 | HR-TB | lineage4.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR18714919 | MDR-TB | lineage4.1 | None | SRR29539688 | MDR-TB | lineage2.2.1;lineage4.1 | None | SRR29539603 | MDR-TB | lineage4.1 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None |
|---|
