Rv2680 - p.Met86Leu
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
20 Sensitive
3 RR-TB
21 HR-TB
6 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
39 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 34 |
| La3;lineage4.9 | 3 |
| 10 | |
| lineage2.1;lineage4.9 | 8 |
| lineage4.9;lineage9 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage2.2.1 | 5 |
| lineage4.9;lineage6.3 | 5 |
| La3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.2.2;lineage4 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage3.1;lineage9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 91 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR926160 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR6358991 | HR-TB | None | ERR4811142 | RR-TB | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR1172728 | RR-TB | La3 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR28119777 | Other | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR926164 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR29093909 | Other | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR926165 | Sensitive | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR137286 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None |
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