lineage | Count |
---|---|
121 | |
lineage1.2.1.2.1 | 2 |
lineage4.3.4.1 | 1 |
lineage4.9 | 14 |
lineage4.5 | 1 |
lineage2 | 3 |
lineage9;lineage3.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1 | 1 |
lineage2.2.1 | 4 |
lineage4.3 | 1 |
lineage4 | 17 |
lineage2.2 | 2 |
lineage4.3.2.1 | 1 |
lineage4.1.2 | 1 |
lineage3.1.2 | 2 |
La2 | 1 |
La1 | 1 |
lineage3 | 1 |
La3 | 1 |
lineage2.2.1.1 | 1 |
lineage4.4.1.1 | 1 |
lineage4.3.3 | 2 |
lineage3.1 | 2 |
spoligotype | Count |
---|---|
None | 183 |
ID | Drug resistance | Lineage | Country iso2 | SRR12416824 | HR-TB | None | SRR1510055 | Sensitive | lineage1.2.1.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR14782405 | HR-TB | None | SRR26159043 | Other | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR176568 | Other | lineage4.3 | None | ERR4816999 | Other | None | SRR3675501 | HR-TB | None | SRR3675311 | Other | None | SRR3675456 | HR-TB | None | ERR176751 | HR-TB | None | ERR176643 | HR-TB | None | ERR212034 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR2027263 | Other | lineage4 | None | SRR3675558 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4816656 | HR-TB | None | ERR212123 | Other | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816466 | HR-TB | None | ERR234659 | HR-TB | None | SRR4033467 | Sensitive | lineage4.3.2.1 | None | ERR4818615 | Other | None | ERR4818929 | HR-TB | None | ERR4818347 | Other | lineage4.1.2 | None | ERR2515883 | Sensitive | lineage3.1.2 | None | ERR1035138 | MDR-TB | None | ERR4819280 | Sensitive | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341333 | HR-TB | None | ERR2693231 | Other | None | ERR2693230 | Other | None | ERR2693239 | HR-TB | None | ERR2693254 | Other | None | SRR6045519 | HR-TB | None | ERR2693257 | Other | None | SRR6044790 | HR-TB | None | SRR6045555 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6046133 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6046460 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | SRR7535086 | Other | None | SRR6046644 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | SRR6896297 | Sensitive | lineage3.1.2 | None | ERR502524 | HR-TB | La2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR6325448 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6789626 | Other | None | ERR294248 | HR-TB | None | ERR502532 | HR-TB | None | SRR7585435 | Other | lineage4.9 | None | ERR323107 | Other | lineage4 | None | ERR323063 | HR-TB | None | ERR1034652 | Other | None | ERR3283010 | Other | La1 | None | ERR1035157 | Other | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283024 | Other | None | ERR3283028 | Other | None | ERR3283032 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3797014 | Other | None | ERR3797016 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797017 | Other | None | ERR3797063 | HR-TB | None | ERR3797044 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4407463 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4797474 | Other | None | ERR4797184 | Sensitive | lineage4 | None | ERR4800341 | Other | lineage3 | None | ERR4798406 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4810741 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR5336148 | Other | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR736835 | HR-TB | None | ERR702404 | HR-TB | None | ERR736848 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | SRR1169249 | Other | La3 | None | ERR9125054 | Sensitive | lineage1.2.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1172817 | HR-TB | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172857 | MDR-TB | None | SRR1173118 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1196494 | MDR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None |
---|