Rv3794 - c.2871C>G
Drug resistance types
2 Sensitive
1 RR-TB
19 HR-TB
3 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.9 | 18 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 6 |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage1.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.1.2.1 | 4 |
| La3;lineage1.1.2 | 1 |
| lineage4 | 3 |
| La3;lineage2.2.1 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage2.2.1 | 3 |
| lineage4.1.3 | 2 |
| lineage4.9;lineage6.3 | 6 |
| 5 | |
| lineage4.6.1.1 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3;lineage2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 81 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| ERR4797054 | Pre-XDR-TB | lineage2.1 | None |
| ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None |
| SRR28119752 | Other | lineage4.9 | None |
| SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None |
| SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None |
| ERR4819422 | HR-TB | lineage4.9 | None |
| SRR5341333 | Other | lineage2.1;lineage4.9 | None |
| ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None |
| SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None |
| SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None |
| ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR25827687 | MDR-TB | lineage1.1.2 | None |
| ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None |
| SRR26399973 | Other | La3;lineage4.9 | None |
| ERR9786682 | Other | lineage4.1.2.1 | None |
| ERR9117721 | HR-TB | La3;lineage1.1.2 | None |
| ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None |
| ERR2027263 | Other | lineage4 | None |
| SRR29055629 | MDR-TB | La3;lineage2.2.1 | None |
| SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None |
| SRR6458423 | HR-TB | lineage2.2.1 | None |
| ERR4815441 | HR-TB | lineage4.9 | None |
| ERR3804169 | HR-TB | lineage4.1.3 | None |
| ERR4817731 | HR-TB | lineage4.9 | None |
| ERR13265748 | Other | lineage4.9;lineage6.3 | None |
| ERR9786611 | HR-TB | lineage4.1.3 | None |
| SRR29050928 | Other | lineage4.9 | None |
| SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| ERR3797070 | Other | lineage4.9 | None |
| SRR29097037 | Other | lineage4.9 | None |
| SRR25827682 | Other | None | |
| SRR1172857 | Other | None | |
| ERR9787197 | Other | None | |
| SRR28119805 | Other | lineage4.9 | None |
| SRR2100373 | Sensitive | lineage2.2.1 | None |
| ERR9786604 | Other | None | |
| ERR9786694 | Other | lineage4.1.2.1 | None |
| SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None |
| ERR4818929 | HR-TB | lineage4.9 | None |
| ERR6358755 | Other | lineage4.6.1.1 | None |
| SRR28119717 | Other | lineage4.9;lineage6.3 | None |
| ERR9787139 | Other | lineage6.3.1 | None |
| ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| ERR3797069 | Other | lineage4.9 | None |
| ERR4820773 | HR-TB | lineage4.9 | None |
| SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR3675216 | Other | lineage2.1;lineage4.9 | None |
| SRR28119811 | Other | lineage2.2.1;lineage6.3 | None |
| SRR28119753 | Other | lineage4.9 | None |
| SRR29093105 | Other | lineage2.2.2;lineage4 | None |
| ERR4816478 | HR-TB | lineage4 | None |
| SRR28119777 | Other | lineage4.9 | None |
| ERR5336148 | Other | lineage2.1;lineage6.3 | None |
| ERR736867 | Other | lineage2.1;lineage4.9 | None |
| SRR26937071 | MDR-TB | La3;lineage2.2.1 | None |
| SRR7496472 | Other | lineage4.9 | None |
| ERR3804155 | Other | lineage4.1.2.1 | None |
| ERR9786601 | Other | lineage4.1.2.1 | None |
| SRR12142341 | HR-TB | lineage2.1 | None |
| SRR28119756 | Other | lineage4.9;lineage6.3 | None |
| SRR6045380 | Other | lineage2.1;lineage4.9 | None |
| ERR13265528 | Other | lineage4.9;lineage6.3 | None |
| SRR3675465 | Other | lineage4.9;lineage6.3 | None |
| SRR29096541 | Other | lineage4.9 | None |
| ERR3283036 | Other | lineage2.1;lineage4.9 | None |
| ERR3283019 | Other | lineage2.1;lineage4.9 | None |
| SRR20969677 | HR-TB | La3;lineage2 | None |
| SRR19303884 | Other | lineage2.1;lineage6.3 | None |
| ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None |
| SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None |
| SRR29051077 | Other | lineage4.9 | None |
| SRR26159043 | Other | lineage4.9 | None |
| SRR29093909 | Other | lineage4.9 | None |
| ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR3675236 | Other | None | |
| ERR212121 | HR-TB | lineage4.9;lineage6.3 | None |
| ERR3283044 | Other | lineage4 | None |
| ERR4800341 | Other | lineage3 | None |
| ERR117722 | Sensitive | lineage2.2.1 | None |
