Rv0006 - c.552C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
3 Sensitive
3 RR-TB
22 HR-TB
5 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
58 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 14 |
| 13 | |
| lineage2.2.1 | 5 |
| lineage4.9;lineage6.3 | 7 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La3;lineage2.1;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.9;lineage7 | 2 |
| La3;lineage4.9 | 5 |
| lineage4.6.1.1 | 2 |
| lineage2.1;lineage4.9 | 6 |
| lineage4.6.1 | 1 |
| La3 | 2 |
| lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage4 | 1 |
| lineage5.2 | 2 |
| lineage6.3.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.8.1 | 1 |
| lineage4.8.1 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.7 | 1 |
| lineage2.1 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 92 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR4407463 | HR-TB | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR1035157 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4800341 | Other | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4811142 | RR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811075 | Other | None | SRR1165699 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR1172728 | RR-TB | La3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR9787197 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4810741 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR28119777 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1172817 | Other | La3 | None | ERR176751 | Other | lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR3797070 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR3675236 | Other | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR7535086 | Other | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None |
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