Rv1484 - c.561T>C
Drug resistance types
11 Sensitive
5 RR-TB
14 HR-TB
9 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| La1;lineage4.1.2 | 1 |
| lineage4.3.4.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.9 | 16 |
| lineage2.2.1 | 1 |
| lineage4 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage4.9 | 7 |
| lineage4.3.2.1 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage2.2.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7;lineage4.9 | 3 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| La1.7 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.8 | 1 |
| La1.2;La1.8.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage1.1.3.1 | 1 |
| M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 66 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| SRR9970978 | Sensitive | La1;lineage4.1.2 | None |
| ERR11465353 | Sensitive | lineage4.3.4.1 | None |
| SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None |
| ERR4796929 | Sensitive | lineage4.9 | None |
| SRR1180270 | Other | lineage2.2.1 | None |
| SRR28351339 | MDR-TB | lineage4 | None |
| ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None |
| ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None |
| SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None |
| ERR1063858 | HR-TB | lineage4.9 | None |
| ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
| ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None |
| SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None |
| ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None |
| ERR4820773 | HR-TB | lineage4.9 | None |
| ERR3797048 | Other | La3;lineage4.9 | None |
| ERR323107 | Sensitive | lineage4.9 | None |
| SRR12708407 | HR-TB | lineage4.3.2.1 | None |
| ERR3283031 | Sensitive | La3;lineage4.9 | None |
| ERR3797063 | Sensitive | La3;lineage4.9 | None |
| ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR4815441 | HR-TB | lineage4.9 | None |
| ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
| ERR1063862 | HR-TB | lineage4.9 | None |
| ERR4817731 | HR-TB | lineage4.9 | None |
| ERR4816478 | HR-TB | lineage4 | None |
| ERR1063849 | HR-TB | lineage4.9 | None |
| ERR4816656 | Other | lineage4.9 | None |
| SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
| ERR4797193 | HR-TB | lineage1.1.2 | None |
| ERR403298 | MDR-TB | M.canetti;lineage4.2 | None |
| SRR1183106 | RR-TB | lineage2.2.1.1 | None |
| ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
| ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None |
| ERR4818929 | HR-TB | lineage4.9 | None |
| SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None |
| SRR3675501 | Other | La1.7;lineage4.9 | None |
| SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None |
| ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None |
| SRR3675461 | RR-TB | lineage4.9 | None |
| ERR3283047 | Sensitive | La3;lineage4.9 | None |
| ERR3283011 | Other | La3;lineage4.9 | None |
| SRR10808805 | Other | La1;lineage4.9 | None |
| ERR4819877 | HR-TB | lineage4.9 | None |
| ERR3797064 | Other | La3;lineage4.9 | None |
| SRR3675488 | Other | La1.7;lineage4.9 | None |
| ERR4188322 | Other | lineage4.6.4;lineage4.9 | None |
| ERR4819422 | HR-TB | lineage4.9 | None |
| SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None |
| ERR4819241 | Other | lineage4.9 | None |
| SRR3675222 | Other | La1.7 | None |
| SRR3675385 | Other | La1.7;lineage4.9 | None |
| SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None |
| SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None |
| ERR4830353 | Other | La1.7 | None |
| SRR3675446 | RR-TB | lineage4.9 | None |
| ERR9786444 | Sensitive | lineage4.8 | None |
| SRR10809074 | Sensitive | lineage4.9 | None |
| ERR3283014 | Sensitive | La3;lineage4.9 | None |
| SRR7240033 | Other | La1.2;La1.8.1 | None |
| SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None |
| ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None |
| ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None |
| ERR8479578 | Sensitive | lineage1.1.3.1 | None |
| SRR3675449 | Other | M.canetti;lineage4.9 | None |
