lineage | Count |
---|---|
79 | |
lineage4.9 | 9 |
lineage1.1.2 | 1 |
lineage4.5 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage2 | 3 |
lineage2.2 | 2 |
lineage4.9;La3 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.1 | 1 |
lineage4.1.1 | 1 |
lineage4.3.4 | 1 |
lineage4 | 8 |
lineage2.2.1 | 3 |
La2 | 1 |
lineage4.7 | 1 |
lineage5.2 | 2 |
lineage4.3.3 | 2 |
La1 | 1 |
lineage4;lineage3.1 | 1 |
La1.2 | 1 |
lineage3.1 | 2 |
spoligotype | Count |
---|---|
None | 124 |
ID | Drug resistance | Lineage | Country iso2 | SRR15368973 | Other | None | SRR26159043 | Other | lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR25827682 | Other | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR3675270 | HR-TB | None | ERR4815604 | HR-TB | None | SRR6325445 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675486 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176793 | Other | lineage4.1.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3742665 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR212123 | Other | None | ERR234659 | HR-TB | None | SRR6046046 | Other | None | SRR5341333 | HR-TB | None | ERR2693239 | HR-TB | None | SRR6044790 | HR-TB | None | SRR5341302 | HR-TB | None | SRR6045053 | Other | None | SRR6046540 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR1063857 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR5311081 | HR-TB | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR1034652 | Other | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6896307 | Sensitive | lineage4.3.3 | None | ERR5311090 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323043 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR3283025 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797069 | Other | None | ERR473332 | Other | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4810741 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR702404 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR702406 | HR-TB | None | ERR8976043 | HR-TB | None | ERR736874 | HR-TB | None | SRR1169194 | Other | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173400 | Other | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1173629 | Other | None | SRR1184294 | HR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173778 | Other | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196566 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR13837691 | Sensitive | lineage4.9 | None | SRR13837660 | Other | lineage4.9 | None |
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