Rv0565c - c.-216C>G
Drug resistance types
4 Sensitive
7 RR-TB
33 HR-TB
9 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
70 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage6.1.3 | 39 |
| lineage4.3.2.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| lineage2.2.1 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage4.9 | 7 |
| M.canetti;lineage4.9 | 4 |
| lineage4.9 | 15 |
| lineage2.1;lineage4.9 | 2 |
| La1.7;lineage4.9 | 3 |
| lineage4.1.2.1 | 3 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.2.BCG | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.9 | 5 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| lineage4.9;lineage7 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 1 |
| La3;lineage4.3.4 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| 1 | |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 124 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR9787156 | Other | lineage6.1.3 | None | ERR9787195 | Other | lineage6.1.3 | None | ERR3803968 | Other | lineage6.1.3 | None | ERR3806830 | Other | lineage6.1.3 | None | ERR9787257 | Other | lineage6.1.3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR1334032 | Other | lineage6.1.3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | ERR3801611 | Other | lineage6.1.3 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR9787176 | Other | lineage6.1.3 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | ERR9787356 | Other | lineage6.1.3 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR3804110 | Other | lineage6.1.3 | None | ERR3803845 | Other | lineage6.1.3 | None | ERR3806613 | Other | lineage6.1.3 | None | ERR12268342 | Other | lineage6.1.3 | None | ERR3803778 | Other | lineage6.1.3 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR9787183 | Other | lineage6.1.3 | None | ERR1023267 | Other | lineage6.1.3 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR3804161 | Other | lineage6.1.3 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR212033 | Other | lineage4.9 | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3283042 | Other | lineage4.9 | None | ERR9787076 | Other | lineage6.1.3 | None | ERR9787321 | Other | lineage6.1.3 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR3804001 | Other | lineage6.1.3 | None | ERR3806655 | Other | lineage6.1.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR9787273 | Other | lineage6.1.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR1166821 | Other | lineage4.1.2.1 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1169249 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR3804130 | Other | lineage6.1.3 | None | ERR9787031 | Other | lineage6.1.3 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR12544231 | Other | lineage6.1.3 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR9787277 | Other | lineage6.1.3 | None | ERR9787149 | Other | lineage6.1.3 | None | SRR6045555 | Other | lineage4.9 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR12268347 | Other | lineage6.1.3 | None | ERR387051 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3804020 | Other | lineage6.1.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR9787227 | Other | lineage6.1.3 | None | ERR9787039 | Other | lineage6.1.3 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3803821 | Other | lineage6.1.3 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3806627 | Other | lineage6.1.3 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR6046485 | Other | lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9787038 | Other | lineage6.1.3 | None | ERR9787384 | Other | lineage6.1.3 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR3804032 | Other | lineage6.1.3 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1640750 | Other | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9787058 | Other | lineage6.1.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR9787366 | Other | lineage6.1.3 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None |
|---|
