Rv1484 - c.-88T>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
6 Sensitive
3 RR-TB
20 HR-TB
3 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
55 Other
lineage Counts
| lineage | Count |
|---|---|
| 18 | |
| lineage4.9 | 14 |
| lineage2.2.1 | 8 |
| lineage4.9;lineage6.3 | 5 |
| lineage2.1;lineage4.9 | 7 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage2.2.1.1 | 8 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.6.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.8 | 2 |
| lineage4.1.2 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage3.1 | 1 |
| lineage4.1.2.1 | 3 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.7 | 1 |
| lineage4.1.3 | 2 |
| lineage6.3.1 | 1 |
| lineage2.1 | 2 |
| La3 | 2 |
| lineage4.3.2.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 96 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR25827682 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR13258004 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR29093124 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR6358755 | Other | lineage4.6.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR4817893 | Other | lineage4.8 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR4816585 | Other | lineage2.2.1 | None | DRR130084 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR4822370 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR234659 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786604 | Other | None | DRR130086 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4816999 | Other | None | SRR6789626 | Other | None | ERR4811105 | HR-TB | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4810741 | HR-TB | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR7496509 | Other | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | ERR13245232 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4407463 | HR-TB | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1035157 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR13258513 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR23862123 | Other | lineage4.8 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR7535086 | Other | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4822349 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None |
|---|
