lineage | Count |
---|---|
lineage2.2.1 | 4 |
100 | |
lineage4 | 10 |
lineage3.1 | 1 |
lineage4.1.2.1 | 6 |
lineage4.9 | 11 |
La1 | 2 |
La1.8.1 | 2 |
lineage4.1.3 | 2 |
lineage4.3.2 | 1 |
lineage1.1.2 | 1 |
lineage4.6.1.2 | 1 |
lineage4.6.2.2 | 1 |
lineage6.3.1 | 1 |
lineage2.2 | 2 |
lineage4.5 | 1 |
lineage4.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.1.2 | 1 |
lineage4.1.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage1.1 | 1 |
spoligotype | Count |
---|---|
None | 154 |
ID | Drug resistance | Lineage | Country iso2 | SRR6982382 | Sensitive | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR294266 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7496509 | Other | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323043 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3439432 | Other | None | ERR3468544 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797061 | Other | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797044 | Other | None | ERR3797069 | Other | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR5336148 | Other | None | ERR736867 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736856 | HR-TB | lineage4 | None | ERR6358837 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736874 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR7801246 | Sensitive | lineage4.6.1.2 | None | ERR8976043 | HR-TB | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR12416824 | HR-TB | None | SRR10809074 | Sensitive | lineage4 | None | SRR1172728 | MDR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1169194 | Other | None | SRR1173153 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR13837615 | Sensitive | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR14782405 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR2101629 | Sensitive | lineage2.2.1 | None | ERR1035239 | HR-TB | None | SRR6325445 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675465 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675234 | Other | None | ERR181824 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3742665 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | SRR3675558 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR1035138 | MDR-TB | None | SRR5341418 | Other | None | SRR5341333 | HR-TB | None | SRR5341456 | Other | None | SRR5341302 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693231 | Other | None | ERR4821051 | Other | lineage1.2.1.2.1 | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | SRR6045526 | HR-TB | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6044790 | HR-TB | None | SRR6046152 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046824 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR294248 | HR-TB | None |
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