Rv3793 - c.1107C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
10 Sensitive
3 RR-TB
23 HR-TB
5 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
40 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 11 |
| lineage2.2.1 | 7 |
| lineage4.1.2.1 | 2 |
| 14 | |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage4.9 | 9 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.3.4 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage2.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 1 |
| La3;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.1.3 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage6.3.1 | 1 |
| lineage6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 83 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811805 | Sensitive | lineage4.8 | pe | SRR8651634 | MDR-TB | lineage2.2.1 | cn | ERR3804155 | Other | lineage4.1.2.1 | None | SRR28393478 | Sensitive | lineage4.8 | None | ERR2184571 | Sensitive | lineage4.8 | pe | ERR3287876 | RR-TB | lineage4.8 | pe | SRR28394162 | Sensitive | lineage4.8 | None | ERR9787197 | Other | None | ERR4812554 | Sensitive | lineage4.8 | pe | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR9786604 | Other | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR8774345 | Sensitive | lineage4.8 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR3732692 | Sensitive | lineage4.8 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR10040513 | MDR-TB | lineage2.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4800341 | Other | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4811105 | HR-TB | None | ERR4811075 | Other | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4811142 | RR-TB | None | ERR4811311 | Other | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR3675236 | Other | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR7496509 | Other | None | SRR20969883 | MDR-TB | lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR10040209 | MDR-TB | lineage2.2.1 | None | SRR7496472 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | ERR4812437 | Sensitive | lineage4.8 | pe | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR10808939 | Sensitive | lineage4.8 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR18213713 | HR-TB | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4810741 | HR-TB | None | ERR161037 | Other | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12416824 | HR-TB | None | ERR3283032 | Other | lineage4.9 | None | ERR9787165 | Other | lineage6 | None | SRR6458423 | HR-TB | lineage2.2.1 | None |
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