Rv3794 - c.1080T>G
Drug resistance types
55 Sensitive
4 RR-TB
37 HR-TB
28 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
39 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 21 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| 3 | |
| M.canetti | 64 |
| M.canetti;lineage4.9 | 4 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La2;M.canetti | 1 |
| La3;M.canetti | 11 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 9 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 5 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| M.canetti;lineage2.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 163 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786843 | Other | None | ERR234659 | Other | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4817181 | Sensitive | M.canetti | None | ERR3597003 | Sensitive | M.canetti | None | SRR22179528 | Sensitive | M.canetti | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | ERR313114 | Sensitive | M.canetti | None | SRR3675545 | Other | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR266126 | Sensitive | La2;M.canetti | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR266123 | Sensitive | M.canetti | None | ERR266125 | Other | La3;M.canetti | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3468607 | Other | lineage4.9 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR4821046 | Sensitive | M.canetti | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR266107 | Other | M.canetti | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | ERR266110 | Other | M.canetti | None | SRR10522783 | Sensitive | M.canetti | None | ERR313113 | Other | M.canetti | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR3597006 | Other | La3;M.canetti | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR9125480 | Sensitive | M.canetti | None | ERR313117 | Other | M.canetti | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | SRR5818652 | Sensitive | M.canetti | dj | SRR5818653 | Sensitive | M.canetti | dj | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR7451301 | Sensitive | M.canetti | None | SRR5818676 | Other | M.canetti | dj | ERR551182 | Sensitive | M.canetti | None | SRR10177260 | Other | M.canetti | None | ERR8976043 | HR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR5818605 | Other | M.canetti | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR551180 | Sensitive | M.canetti | None | SRR10177262 | Sensitive | M.canetti | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR6044815 | Other | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR5818668 | Sensitive | M.canetti | dj | SRR5818685 | Sensitive | M.canetti | None | ERR266121 | Sensitive | M.canetti | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR266122 | Sensitive | La3;M.canetti | None | ERR3597005 | Sensitive | M.canetti | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR313116 | Sensitive | M.canetti | None | ERR4819927 | Sensitive | M.canetti | None | ERR3597001 | Sensitive | M.canetti | None | ERR552304 | Sensitive | M.canetti | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR5818567 | Other | M.canetti | dj | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR5818614 | Sensitive | M.canetti | dj | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4815361 | Other | M.canetti | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR10177261 | Sensitive | M.canetti | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR266108 | Sensitive | M.canetti | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3468544 | Other | lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR313115 | Other | M.canetti | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR18289196 | Sensitive | M.canetti | None | ERR266120 | Sensitive | M.canetti | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3597007 | Sensitive | M.canetti | None | ERR551181 | Sensitive | M.canetti | None | ERR9125475 | Other | M.canetti | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816019 | Sensitive | M.canetti | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | SRR10177258 | Other | M.canetti | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | ERR266124 | Other | M.canetti | None | SRR28170812 | Sensitive | M.canetti | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1043163 | Other | La3;M.canetti | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR1640750 | Other | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR551179 | Sensitive | M.canetti | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1336822 | Sensitive | M.canetti | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR3597004 | Sensitive | M.canetti | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR10522763 | Sensitive | M.canetti | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR16058668 | Sensitive | M.canetti | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR551055 | Sensitive | M.canetti | None | SRR6650709 | Sensitive | M.canetti | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1336824 | Sensitive | La3;M.canetti | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR551056 | Sensitive | M.canetti | None | SRR10177259 | Other | M.canetti | None | ERR3597002 | Other | M.canetti | None | ERR552307 | Sensitive | M.canetti | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR551057 | Other | M.canetti | None | ERR266106 | Sensitive | M.canetti | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR16058674 | Other | M.canetti | None | ERR266109 | Sensitive | M.canetti | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5818661 | Other | M.canetti | dj | ERR552305 | Sensitive | M.canetti | None | SRR24061598 | Sensitive | M.canetti | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR552306 | Sensitive | M.canetti;lineage4.9 | None | ERR1043164 | Other | La3;M.canetti | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None |
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