Rv3805c - c.624T>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
2 Sensitive
1 RR-TB
19 HR-TB
0 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
65 Other
lineage Counts
| lineage | Count |
|---|---|
| 19 | |
| M.canetti;lineage1 | 1 |
| lineage4.9 | 15 |
| lineage4.9;lineage6.3 | 5 |
| lineage2.1 | 1 |
| lineage2.1;lineage4.9 | 8 |
| lineage2.2.1 | 5 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage3 | 1 |
| lineage4.3.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.1.3 | 2 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.1.2.1 | 1 |
| La3;lineage4.9 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.6.1 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 90 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811142 | RR-TB | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR28119753 | Other | lineage4.9 | None | ERR4811311 | Other | None | SRR3675248 | Other | lineage4.9 | None | SRR29093909 | Other | lineage4.9 | None | SRR29051093 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR12416824 | HR-TB | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR29603691 | Sensitive | lineage3 | None | ERR2514692 | Other | None | SRR25827682 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4811105 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR3675236 | Other | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR9117721 | HR-TB | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR3675549 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4818615 | Sensitive | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4819241 | Other | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4830353 | Other | La1.7 | None | SRR6045526 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | ERR4816999 | Other | None | ERR4810741 | HR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR4816656 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | SRR6789626 | Other | None | ERR4800341 | Other | None | ERR4811075 | Other | None |
|---|
