Rv0001 - c.534T>C


Drug resistance types
3 Sensitive 2 RR-TB 33 HR-TB 9 MDR-TB 1 Pre-XDR-TB 0 XDR-TB 48 Other
lineage Counts
lineage Count
lineage3 1
lineage4.9 15
lineage2.2.2 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 3
lineage4.2.2 4
La1.6;La3;lineage4.6.4;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage2.1;lineage4.9 10
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage4 2
lineage2.1;lineage4.9;lineage6.3 8
lineage2.2.1 3
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
M.canetti;lineage2.2.2;lineage6.2 2
9
lineage4.9;lineage6.3 3
lineage4.3.4.2.1 1
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage4.9 2
lineage2.1;lineage6.3 1
La3;lineage1.1.2 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La3;lineage4.3.4 1
lineage2.2 1
La3;lineage4.9 1
M.canetti;lineage4.9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.1.2 1
La3 1
lineage4.6.3;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La1;lineage4.9 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
lineage4.1.1.1 1
spoligotype Counts
spoligotype Count
None 96
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4800341 HR-TB lineage3 None
SRR6046046 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1724008 Sensitive lineage4.2.2 cn
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR3675234 HR-TB La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR2446566 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4814352 Other lineage2.2.1 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR6458423 HR-TB lineage2.2.1 None
SRR1180137 RR-TB lineage2.2.1 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR6045053 Other lineage4 None
SRR1184381 MDR-TB None
ERR9786671 Other None
ERR9786604 Other None
SRR6789626 Other None
SRR18213713 HR-TB None
ERR212001 HR-TB None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2179592 Sensitive lineage4.2.2 cn
SRR6045242 Other lineage2.1;lineage4.9 None
SRR6045548 Other lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR1173400 Other lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR4799513 HR-TB lineage2.2 None
ERR181744 HR-TB La3;lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4818347 Other lineage4.1.2 None
SRR1196546 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1172817 Other La3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283021 MDR-TB lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9117709 Other None
ERR234659 HR-TB None
SRR3675236 Other None
ERR4769497 Other La1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR26399631 Other lineage4.2.2 None
ERR176793 Other lineage4.1.1.1 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811597 Sensitive lineage4.2.2 cn
SRR6044790 Other lineage2.1;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR4811493 HR-TB lineage4.9 None
SRR1196583 Other lineage4.9 None