lineage | Count |
---|---|
lineage4.9 | 11 |
131 | |
lineage3.1 | 2 |
lineage4.1.2.1 | 5 |
lineage4 | 15 |
lineage4.4.1.2 | 1 |
lineage2.2.1 | 25 |
La1 | 1 |
lineage2 | 3 |
lineage3 | 2 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.6.2.2 | 1 |
La3 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.5 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4.1.1.3 | 1 |
lineage2.2 | 3 |
lineage4.8 | 1 |
La1.8.1 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.2 | 1 |
lineage2.2.1.1 | 1 |
spoligotype | Count |
---|---|
None | 214 |
ID | Drug resistance | Lineage | Country iso2 | ERR1035157 | Other | lineage4.9 | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR323041 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323063 | HR-TB | None | ERR3797016 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR11044539 | MDR-TB | lineage2.2.1 | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283027 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR1063862 | HR-TB | None | ERR11044520 | MDR-TB | lineage2.2.1 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR4811022 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797069 | Other | None | ERR3797087 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR3797015 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR133970 | MDR-TB | lineage2.2.1 | ru | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR5336148 | Other | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR067745 | MDR-TB | lineage2.2.1 | ru | ERR736867 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6359045 | HR-TB | None | ERR702404 | HR-TB | None | ERR736839 | Other | None | SRR16087898 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358979 | Other | None | ERR6359069 | Other | lineage4.9 | None | ERR702406 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736875 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | SRR1167384 | Other | lineage4 | None | ERR9117709 | HR-TB | None | SRR10808805 | Sensitive | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | ERR8976043 | HR-TB | None | ERR9786604 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR10380019 | MDR-TB | lineage2.2.1 | None | SRR1172728 | MDR-TB | None | SRR1169249 | Other | La3 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1173400 | Other | None | SRR1172817 | HR-TB | None | SRR1172951 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196546 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR12142341 | HR-TB | None | SRR14802218 | MDR-TB | lineage2.2.1 | None | SRR13837766 | Sensitive | lineage4.9 | None | SRR14781924 | Pre-XDR-TB | lineage2.2.1 | None | SRR15368973 | Other | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR1640750 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | ERR176778 | HR-TB | None | SRR24256060 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3082095 | MDR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | None | SRR3675465 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3085263 | MDR-TB | lineage2.2.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675221 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675222 | Other | None | SRR3675501 | HR-TB | None | SRR3675236 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR181887 | HR-TB | None | SRR3675311 | Other | None | ERR176643 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675510 | Other | None | ERR212033 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | ERR4816466 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR117459 | MDR-TB | lineage2.2.1 | ru | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818021 | Other | La1.8.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | ERR234659 | HR-TB | None | SRR5007188 | Other | lineage4 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | SRR5153928 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341333 | HR-TB | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | ERR4819933 | Other | lineage4.9 | None | SRR6045503 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045519 | HR-TB | None | SRR23310953 | MDR-TB | lineage2.2 | None | SRR23311061 | MDR-TB | lineage2.2 | None | ERR278594 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6045555 | HR-TB | None | ERR4827961 | MDR-TB | lineage2.2.1 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046225 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR4830075 | MDR-TB | lineage2.2.1 | None | SRR6046514 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046540 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4872336 | MDR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | SRR6785499 | MDR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | ERR5311081 | HR-TB | None | ERR323036 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR5311090 | HR-TB | None | SRR7496509 | Other | None | SRR7496517 | Other | None | ERR323038 | HR-TB | None |
---|