Rv1854c - c.642T>C
Drug resistance types
14 Sensitive
1 RR-TB
62 HR-TB
4 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 5 |
| 73 | |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4.9 | 6 |
| lineage2.2 | 4 |
| lineage4.3.4 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.1 | 1 |
| lineage4.2.1 | 2 |
| lineage4 | 4 |
| lineage4.8 | 5 |
| lineage4.3.3 | 2 |
| lineage3 | 3 |
| lineage3.1.1 | 2 |
| lineage4.7 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| La1 | 2 |
| lineage4.1.3 | 2 |
| lineage1.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 121 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR20969731 | Other | lineage2.2.1 | None | SRR15368973 | Other | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR14782405 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR3675488 | HR-TB | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814437 | Other | lineage4.1.2.1 | None | ERR4814841 | Other | lineage4.1 | None | ERR4815394 | RR-TB | lineage4.2.1 | None | SRR3675486 | HR-TB | None | ERR4815399 | Sensitive | lineage4.2.1 | gb | ERR181744 | HR-TB | None | SRR3675234 | Other | None | SRR3675270 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675311 | Other | None | ERR2229578 | Sensitive | lineage4 | None | ERR2228921 | Sensitive | lineage4.8 | dk | SRR3675550 | Other | None | ERR212034 | HR-TB | None | SRR3732645 | MDR-TB | lineage4.3.3 | None | SRR3675555 | HR-TB | None | ERR2229137 | Sensitive | lineage4.8 | None | ERR212123 | Other | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3732718 | MDR-TB | lineage4.3.3 | None | ERR4817489 | Other | lineage3 | None | ERR2229373 | Sensitive | lineage4.8 | dk | ERR2229487 | Sensitive | lineage4.8 | None | ERR2229429 | HR-TB | lineage4.8 | None | ERR2245334 | Sensitive | lineage3.1.1 | None | ERR2245286 | HR-TB | lineage3.1.1 | None | ERR4817987 | Other | lineage4.7 | None | ERR2513054 | Other | lineage4.2.2.2 | None | ERR2513642 | Sensitive | lineage4.1.1 | None | ERR2512460 | Other | lineage1.2.2.2 | gb | ERR2514125 | Other | lineage3 | None | SRR5341418 | Other | None | ERR2514540 | Other | lineage3 | gb | SRR5341313 | HR-TB | None | ERR4819786 | Sensitive | lineage2.2.1 | None | ERR2693231 | Other | None | SRR6045526 | HR-TB | None | ERR4821823 | Sensitive | lineage1.2.1.2.1 | None | ERR2693254 | Other | None | ERR2693230 | Other | None | ERR2693257 | Other | None | SRR6044790 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6325448 | HR-TB | None | ERR4831117 | HR-TB | None | ERR5311099 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6797358 | Other | lineage3.1.2.1 | None | ERR502889 | Other | None | ERR1034652 | Other | None | ERR1063859 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283017 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283032 | HR-TB | None | ERR3283024 | Other | None | ERR3797024 | Other | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3439432 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797014 | Other | None | ERR3797015 | HR-TB | None | ERR3797017 | Other | None | ERR3797046 | HR-TB | None | ERR3797044 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797061 | Other | None | ERR4810741 | HR-TB | None | ERR387051 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6336805 | Sensitive | lineage1.2.1.2 | None | ERR736839 | Other | None | ERR6358991 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | SRR11972332 | HR-TB | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR11972446 | MDR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR12142341 | HR-TB | None |
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