lineage | Count |
---|---|
La2 | 1 |
88 | |
lineage4.9 | 5 |
lineage4.3.4.2.1 | 3 |
lineage4.1.2.1 | 5 |
lineage3.1 | 4 |
lineage4.1.3 | 2 |
lineage2 | 2 |
lineage3 | 2 |
lineage1.2.2.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 1 |
lineage1.1.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4 | 3 |
La3 | 1 |
lineage4.3.3 | 1 |
lineage2.2.1 | 4 |
lineage4.5 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.9;La3 | 1 |
lineage4.1 | 1 |
lineage4.1.1 | 1 |
lineage2.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4.1.1.3 | 1 |
lineage2.2 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1;lineage1 | 1 |
lineage4.7 | 4 |
spoligotype | Count |
---|---|
None | 143 |
ID | Drug resistance | Lineage | Country iso2 | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323038 | HR-TB | None | SRR7535086 | Other | None | SRR7585435 | Other | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR3283027 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR3283017 | HR-TB | None | ERR3797069 | Other | None | ERR3283036 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3468544 | HR-TB | None | ERR4188350 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4800341 | Other | lineage3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR5336148 | Other | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR702406 | HR-TB | None | ERR6358837 | HR-TB | None | ERR736867 | HR-TB | None | ERR9786671 | Other | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR736874 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169194 | Other | None | SRR1172951 | Other | None | SRR1169306 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172234 | Other | None | SRR1172857 | MDR-TB | None | SRR1173153 | HR-TB | None | SRR1173118 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173629 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1173778 | Other | None | SRR1184372 | MDR-TB | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR13861372 | Other | lineage4.9 | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1640750 | HR-TB | None | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR6325445 | HR-TB | None | ERR4815604 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675465 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR1035239 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR161033 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675311 | Other | None | SRR3416776 | Other | lineage2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR176568 | Other | lineage4.3 | None | ERR4816999 | Other | None | SRR3675545 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4817060 | RR-TB | None | ERR212001 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR3675558 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816585 | Other | lineage2.2 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR234659 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4821053 | Other | lineage3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | ERR2653095 | MDR-TB | lineage4.7 | None | ERR2653089 | MDR-TB | lineage4.7 | None | ERR2693239 | HR-TB | None | ERR2653067 | MDR-TB | lineage4.7 | None | ERR2653091 | MDR-TB | lineage4.7 | None | ERR278594 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6325448 | HR-TB | None | ERR323036 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR294248 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None |
---|