Rv0005 - c.588G>A


Drug resistance types
1 Sensitive 2 RR-TB 50 HR-TB 25 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 40 Other
lineage Counts
lineage Count
M.canetti;lineage2.1;lineage6.3 2
8
La3;M.canetti;lineage2.1;lineage4.9 11
lineage2.1;lineage4.9 9
lineage2.1;lineage2.2;lineage6.3 1
M.canetti;lineage2.1;lineage4.9 16
M.canetti;lineage2.1;lineage3 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.9 11
La3;M.canetti;lineage4.8;lineage4.9 1
La3;lineage4.8 1
lineage4.9;lineage6.3 3
La3;lineage2.1;lineage4.9 1
lineage4.7 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage3 1
lineage4.1.2.1 5
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 3
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage2.2.1;lineage6.3 1
lineage4 1
lineage1.1.2;lineage4 1
lineage1.2.2.2 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.2.1 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 3
lineage2.1 1
lineage2.1;lineage6.3 1
lineage2.2.1 2
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.9 1
La3;M.canetti;lineage2.2.1 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage2.1;lineage4.3.2 1
lineage4.1.1.1 1
La1.7.1;lineage4.9 1
La3 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage3.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
La3;M.canetti;lineage3.1 1
M.canetti;lineage2.1 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.2.2;lineage6.2 2
La3;M.canetti;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage1.1;lineage4 1
M.canetti;lineage2.2 1
lineage3.1.1 1
spoligotype Counts
spoligotype Count
None 120
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR9117709 Other None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR18213713 HR-TB None
ERR4817893 Other La3;lineage4.8 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4819932 Other lineage4.7 None
SRR1173355 Other lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4821053 RR-TB lineage3 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR1035157 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR22249812 Sensitive lineage4 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR29440882 HR-TB lineage1.2.2.2 None
SRR1196546 Other lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4820854 Other lineage4.1.2.1 None
ERR1063862 HR-TB lineage4.9 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR1173400 Other lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
SRR3675221 Other lineage4.9 None
ERR4814352 Other lineage2.2.1 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4819781 Other lineage2.2.1 None
SRR1184372 MDR-TB None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1196768 MDR-TB None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1196583 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
SRR1167055 Other lineage4.1.2.1 None
ERR4816999 Other None
ERR176793 Other lineage4.1.1.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR1172728 RR-TB La3 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR323041 HR-TB M.canetti;lineage2.1 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR987722 MDR-TB None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675572 Other None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR1165506 Other lineage4.1.2.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4819322 Other lineage1.1;lineage4 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR1196474 Other lineage3.1.1 None
SRR1184380 Other lineage2.1;lineage4.9 None