lineage | Count |
---|---|
lineage4.1.2.1 | 14 |
68 | |
lineage4.3.3 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 2 |
lineage4.1.1 | 1 |
lineage4.1.3 | 2 |
lineage2.2.2 | 1 |
lineage6 | 1 |
lineage4.9 | 15 |
lineage4.4.1.1 | 2 |
lineage4.5 | 2 |
lineage2.2.1 | 6 |
lineage9;lineage3.1 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.1 | 1 |
lineage4.3.4 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.8 | 1 |
lineage4 | 4 |
lineage4.1.1.3 | 2 |
lineage4.1;lineage1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage2.2 | 1 |
La1.8.1 | 2 |
lineage4;lineage1.1 | 1 |
lineage3 | 1 |
lineage1.1 | 1 |
lineage3.1 | 2 |
La2 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.7 | 1 |
La1 | 2 |
spoligotype | Count |
---|---|
None | 144 |
ID | Drug resistance | Lineage | Country iso2 | ERR5917710 | Other | lineage4.1.2.1 | None | ERR5336148 | Other | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR8976043 | HR-TB | None | ERR702406 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR6358991 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117709 | HR-TB | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR13861332 | Other | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13861224 | Sensitive | lineage4.9 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | ERR4815604 | HR-TB | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR176751 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675221 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675488 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675222 | Other | None | SRR3675311 | Other | None | ERR2229542 | Other | lineage4.8 | None | SRR3675501 | HR-TB | None | SRR3675383 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675558 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675545 | HR-TB | None | ERR212034 | HR-TB | None | ERR212121 | HR-TB | None | ERR212123 | Other | None | SRR3675572 | Other | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816585 | Other | lineage2.2 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818021 | Other | La1.8.1 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4818615 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6045952 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | ERR4821705 | Sensitive | None | SRR6046066 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6046225 | HR-TB | None | SRR6325442 | HR-TB | None | ERR4830353 | Other | None | SRR6046397 | Other | None | SRR6046305 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | ERR294248 | HR-TB | None | SRR6789626 | Other | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR323036 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR7496509 | Other | None | ERR5311099 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7496517 | Other | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR323038 | HR-TB | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR323043 | HR-TB | None | ERR323063 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283027 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR4596910 | Sensitive | lineage4 | None | ERR3797069 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4798262 | HR-TB | La1 | None |
---|