Rv1173 - c.1155C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
3 Sensitive
1 RR-TB
30 HR-TB
13 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
74 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 3 |
| 17 | |
| lineage4.1.3 | 2 |
| lineage4.6.1 | 1 |
| lineage2.2.1 | 5 |
| lineage4.9 | 23 |
| lineage6.3.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 7 |
| La3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.1;lineage4.9 | 11 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.9;lineage6.3 | 7 |
| lineage4.1.2.1 | 3 |
| lineage4.9;lineage7 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 2 |
| lineage5.2 | 2 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4.3.2.1 | 3 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage2.2.1.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.2.2.2 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.8 | 1 |
| lineage2.1 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 124 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2027263 | Other | lineage4 | None | ERR4800341 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4811142 | RR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR29093909 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675236 | Other | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR2653084 | MDR-TB | lineage4.4.1.1 | None | SRR28119777 | Other | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR9117709 | Other | None | ERR4816656 | Other | lineage4.9 | None | SRR1172817 | Other | La3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR11776039 | MDR-TB | lineage4.4.1.1 | None | ERR11774853 | MDR-TB | lineage4.4.1.1 | None | SRR28119805 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4819241 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR3675214 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR12142451 | Sensitive | lineage2.2.1.1 | None | SRR1184294 | Other | lineage4.9 | None | ERR11774854 | MDR-TB | lineage4.4.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SAMN02350442 | MDR-TB | lineage4.3.2.1 | za | ERR11776020 | MDR-TB | lineage4.4.1.1 | None | ERR234659 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR1062856 | MDR-TB | lineage4.3.2.1 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR1011485 | MDR-TB | lineage4.3.2.1 | None | ERR181887 | Other | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142450 | Sensitive | lineage2.2.1.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR3283044 | Other | lineage4 | None | ERR9117721 | HR-TB | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR29016780 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR11774856 | MDR-TB | lineage4.4.1.1 | None | ERR2514692 | Other | None | ERR9787197 | Other | None | ERR2653198 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None |
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