lineage | Count |
---|---|
82 | |
lineage4.1 | 1 |
lineage2.2 | 1 |
La1.8.1 | 1 |
lineage2.2.1 | 7 |
lineage4 | 8 |
lineage4.9 | 7 |
La2 | 1 |
La1.2 | 1 |
lineage2 | 2 |
La1 | 1 |
lineage3 | 1 |
lineage1.1.2 | 2 |
lineage3.1 | 2 |
lineage4.9;La3 | 1 |
lineage4.5 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 124 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675574 | HR-TB | None | ERR212123 | Other | None | ERR2446566 | Other | lineage4.1 | None | ERR212121 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR502912 | Other | lineage2.2.1 | None | SRR5341432 | HR-TB | lineage4 | None | ERR234659 | HR-TB | None | ERR4818394 | Other | lineage4.9 | None | SRR5341315 | Sensitive | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | ERR1035138 | MDR-TB | None | ERR2693231 | Other | None | SRR5341333 | HR-TB | None | ERR2693254 | Other | None | ERR2693230 | Other | None | SRR6045503 | HR-TB | None | SRR6044790 | HR-TB | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6789626 | Other | None | SRR6046644 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR3283024 | Other | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR323043 | HR-TB | None | ERR1034634 | HR-TB | None | ERR1034652 | Other | None | ERR3445501 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797043 | HR-TB | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR4769497 | HR-TB | La1.2 | None | ERR3797069 | Other | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798262 | HR-TB | La1 | None | ERR4800341 | Other | lineage3 | None | ERR4811142 | MDR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR702404 | HR-TB | None | ERR5336148 | Other | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736867 | HR-TB | None | ERR702406 | HR-TB | None | ERR736874 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9787197 | Other | None | ERR9786843 | Other | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172857 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173706 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173629 | Other | None | SRR1172951 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1175049 | RR-TB | None | SRR1173778 | Other | None | SRR1175074 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR12142341 | HR-TB | None | SRR15368973 | Other | None | SRR12416824 | HR-TB | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827682 | Other | None | SRR26159043 | Other | lineage4.9 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675221 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR2027263 | Other | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675311 | Other | None | ERR176751 | HR-TB | None | ERR212001 | HR-TB | None |
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