Rv1173 - c.2388C>G

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
4 Sensitive 1 RR-TB 18 HR-TB 4 MDR-TB 2 Pre-XDR-TB 1 XDR-TB 68 Other
lineage Counts
lineage Count
lineage2.1;lineage4.9 13
lineage2.2.1 7
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage2.1;lineage4.9;lineage6.3 4
lineage4.9;lineage6.3 8
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage4.9 13
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.2.BCG;La1.8.1 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2.1.2 1
La1.7;lineage4.9;lineage7 2
M.canetti;lineage2.1;lineage4.9 2
La3;lineage4.9 2
lineage2.1;lineage6.3 2
lineage4 1
17
lineage4.3.4.2.1 2
La1.7.1;La1.7.X-unk4;lineage7 1
M.canetti;lineage2.1;lineage6.3 1
La3;lineage2.1;lineage4.9;lineage6.3 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.2;lineage4.6.3;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
La3;lineage2.1;lineage4.9 1
lineage4.9;lineage9 1
lineage2.1 2
lineage2.2.1;lineage3 1
lineage1.1.2 1
M.canetti 2
lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.1.1.1 1
spoligotype Counts
spoligotype Count
None 98
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675581 Other lineage2.1;lineage4.9 None
SRR29055629 MDR-TB lineage2.2.1 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3797070 Other lineage4.9 None
SRR28119805 Other lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR4769497 Other La1;lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1173778 Other lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR4797054 Pre-XDR-TB lineage2.2.1.2 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR4800341 Other None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR26159043 Other lineage4.9 None
ERR4811105 HR-TB None
ERR4811075 Other None
SRR28119753 Other lineage4.9 None
SRR28119777 Other lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR176751 Other lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR1184381 MDR-TB None
ERR9787197 Other None
ERR234659 Other None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
SRR6045526 Other lineage4.9 None
ERR4810741 HR-TB None
ERR4811142 RR-TB None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR9117721 HR-TB None
SRR20969677 HR-TB lineage2.1 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR4816585 Other lineage2.2.1 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR702406 Other lineage2.1 None
SRR28119811 Other lineage2.2.1 None
SRR28119752 Other lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR9786843 Other None
SRR25827682 Other None
ERR212001 HR-TB None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR4407463 HR-TB None
SRR18213713 HR-TB None
ERR266125 Other M.canetti None
ERR266124 Other M.canetti None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR161034 Other lineage4.3.4.2.1 None
ERR176793 Other lineage4.1.1.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR502912 Other lineage2.2.1 None
ERR4811311 Other None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR3675236 Other None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR29017461 Other La3;lineage4.9 None
SRR12142341 HR-TB lineage2.2.1 None
SRR12416824 HR-TB None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR5336148 Other lineage2.1;lineage6.3 None