Rv1305 - c.114T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
17 Sensitive
0 RR-TB
34 HR-TB
3 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 36 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La3;lineage4.9 | 5 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage2.2.1 | 3 |
| lineage4.3.4 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 83 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6045053 | Other | lineage4 | None | SRR6046046 | Other | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR176651 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR29096394 | Sensitive | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None |
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